chr4.CM0025.250.nd (Lotus japonicus)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 chr4.CM0025.250.nd T010193_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-4
M01612_2.00 		Arabidopsis thaliana
NRCCGHCMNN
NNKGDCGGYN		 PBM
Weirauch et al.(2014)
pTH8092 		0.743 0.820
ERF055
M06577_2.00 		Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN		 Dap-seq
OMalley et al.(2016)
At1g36060_col_a 		0.730 0.800
ERF055
M06578_2.00 		Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN		 Dap-seq
OMalley et al.(2016)
At1g36060_colamp_a 		0.730 0.800
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr4.CM0025.250.nd AP2 102 153

Links

Other AP2 family TFs
Other Lotus japonicus TFs

417 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29889.m003269 Ricinus communis 29889.m003269 I
AMTR_s00057p00042800 Amborella trichopoda AMTR_s00057p00042800 I
Aquca_003_00568 Aquilegia coerulea Aquca_003_00568 I
AT3G16940 Arabidopsis thaliana AT3G16940 I
Bo5g123580 Brassica oleracea Bo5g123580 I
Bo8g043280 Brassica oleracea Bo8g043280 I
Bostr.30275s0060 Boechera stricta Bostr.30275s0060 I
Bra022188 Brassica rapa Bra022188 I
Bra038040 Brassica rapa Bra038040 I
Cagra.0053s0009 Capsella grandiflora Cagra.0053s0009 I
Cagra.4396s0001 Capsella grandiflora Cagra.4396s0001 I
CAMTA5 Arabidopsis thaliana AT4G16150 D
Carubv10004090m.g Capsella rubella Carubv10004090m.g I
Carubv10012963m.g Capsella rubella Carubv10012963m.g I
cassava40488.m1 Manihot esculenta cassava40488.m1 I
Ca_02997 Cicer arietinum Ca_02997 I
chr4.CM0429.140.nd Lotus japonicus chr4.CM0429.140.nd I
Ciclev10004273m.g Citrus clementina Ciclev10004273m.g I
Cla009415 Citrullus lanatus Cla009415 I
Cucsa.325250 Cucumis sativus Cucsa.325250 I
Eucgr.H04035 Eucalyptus grandis Eucgr.H04035 I
evm.TU.supercontig_929.1 Carica papaya evm.TU.supercontig_929.1 I
fgenesh1_pg.C_scaffold_7002321 Arabidopsis lyrata fgenesh1_pg.C_scaffold_7002321 I
fgenesh1_pm.C_scaffold_3001474 Arabidopsis lyrata fgenesh1_pm.C_scaffold_3001474 I
gene10891-v1.0-hybrid Fragaria vesca gene10891-v1.0-hybrid I
GLYMA07G37090 Glycine max GLYMA07G37090 I
GLYMA09G04310 Glycine max GLYMA09G04310 I
GLYMA15G15350 Glycine max GLYMA15G15350 I
GLYMA17G03510 Glycine max GLYMA17G03510 I
Gorai.004G075100 Gossypium raimondii Gorai.004G075100 I
Gorai.005G065700 Gossypium raimondii Gorai.005G065700 I
Gorai.006G079000 Gossypium raimondii Gorai.006G079000 I
Gorai.011G198600 Gossypium raimondii Gorai.011G198600 I
GSMUA_Achr8G10490_001 Musa acuminata GSMUA_Achr8G10490_001 I
Lus10016873.g Linum usitatissimum Lus10016873.g I
Lus10036455.g Linum usitatissimum Lus10036455.g I
Lus10037738.g Linum usitatissimum Lus10037738.g I
Lus10041126.g Linum usitatissimum Lus10041126.g I
MDP0000164873 Malus domestica MDP0000164873 I
MDP0000167705 Malus domestica MDP0000167705 I
MDP0000233860 Malus domestica MDP0000233860 I
mgf012030m Mimulus guttatus mgf012030m I
mgf013655m Mimulus guttatus mgf013655m I
MTR_2g034650 Medicago truncatula MTR_2g034650 I
MTR_4g121840 Medicago truncatula MTR_4g121840 I
OB07G20740 Oryza brachyantha OB07G20740 I
OGLUM07G13800 Oryza glumaepatula OGLUM07G13800 I
OLONG_014480 Oryza longistaminata OLONG_014480 I
ONIVA07G13300 Oryza nivara ONIVA07G13300 I
OPUNC07G13630 Oryza punctata OPUNC07G13630 I
orange1.1g002476m.g Citrus sinensis orange1.1g002476m.g I
ORUFI07G15090 Oryza rufipogon ORUFI07G15090 I
OS07G0490200 Oryza sativa OS07G0490200 I
PK20811.1 Cannabis sativa PK20811.1 I
POPTR_0008s10730 Populus trichocarpa POPTR_0008s10730 I
POPTR_0010s15160 Populus trichocarpa POPTR_0010s15160 I
PRUPE_ppa001493mg Prunus persica PRUPE_ppa001493mg I
Q2WEL1_ORYSA Oryza sativa Q2WEL1_ORYSA D
SapurV1A.0050s0650 Salix purpurea SapurV1A.0050s0650 I
SapurV1A.0060s0130 Salix purpurea SapurV1A.0060s0130 I
Solyc01g060170.2 Solanum lycopersicum Solyc01g060170.2 I
Solyc12g099340.1 Solanum lycopersicum Solyc12g099340.1 I
TCM_021327 Theobroma cacao TCM_021327 I
Thhalv10020047m.g Eutrema salsugineum Thhalv10020047m.g I
Thhalv10024342m.g Eutrema salsugineum Thhalv10024342m.g I
VIT_05s0077g01240 Vitis vinifera VIT_05s0077g01240 I