ARID3B (Pan troglodytes)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01388 (ARID) IPR001606 ENSPTRG00000007277 T014743_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Arid3b
M01659_2.00 		Mus musculus
NNDATTAAWWN
NWWTTAATHNN		 PBM
Weirauch et al.(2014)
pTH4425 		0.785 0.988
ARID3A
M01658_2.00 		Microcebus murinus
NDATHAWDN
NHWTDATHN		 PBM
Weirauch et al.(2014)
pTH9214 		0.695 0.895
Arid3a
M00115_2.00 		Mus musculus
NDATHADDN
NHHTDATHN		 PBM
Badis et al.(2009)
Arid3a_3875 		0.695 0.895
Arid3a
M01660_2.00 		Mus musculus
NDATHAADN
NHTTDATHN		 PBM
Weirauch et al.(2014)
pTH5169 		0.695 0.895
ARID3A
M01662_2.00 		Procavia capensis
NNATHDNNN
NNNHDATNN		 PBM
Weirauch et al.(2014)
pTH9384 		0.695 0.895
Arid3a
M02651_2.00 		Mus musculus
ATYAAA
TTTRAT		 SELEX
Mathelier et al.(2014)
MA0151.1 		0.695 0.895
ARID3A
M09766_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DRI1_01 		0.695 0.895
DDB_G0275333
M01656_2.00 		Dictyostelium discoideum
NNATHDNNNN
NNNNHDATNN		 PBM
Weirauch et al.(2014)
pTH5168 		0.675 0.488
cfi-1
M01667_2.00 		Caenorhabditis elegans
NNATHDNN
NNHDATNN		 PBM
Weirauch et al.(2014)
pTH5118 		0.657 0.756
retn
M01664_2.00 		Drosophila melanogaster
NDATHRNN
NNYDATHN		 PBM
Weirauch et al.(2014)
pTH5119 		0.644 0.791
retn
M03590_2.00 		Drosophila melanogaster
NNATTRATHN
NDATYAATNN		 SELEX
Nitta et al.(2015)
retn_1 		0.644 0.791
retn
M05899_2.00 		Drosophila melanogaster
AATYAAAM
KTTTRATT		 B1H
Zhu et al.(2011)
retn_SANGER_5_FBgn0004795 		0.644 0.791
retn
M09768_2.00 		Drosophila melanogaster
NNRATTAADN
NHTTAATYNN		 Transfac
Matys et al.(2006)
I$DRI_01 		0.644 0.791
ACYPI009013
M01655_2.00 		Acyrthosiphon pisum
NDATHAADN
NHTTDATHN		 PBM
Weirauch et al.(2014)
pTH5117 		0.621 0.686
GSPATT00004674001
M01665_2.00 		Paramecium tetraurelia
NNATYHNN
NNDRATNN		 PBM
Weirauch et al.(2014)
pTH5124 		0.508 0.419
TTHERM_00243900
M01666_2.00 		Tetrahymena thermophila
NDDATYANN
NNTRATHHN		 PBM
Weirauch et al.(2014)
pTH5128 		0.508 0.372
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPTRP00000040945 ARID/BRIGHT 217 303

Links

Other ARID/BRIGHT family TFs
Other Pan troglodytes TFs

364 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R006616 Calypte anna Aan_R006616 I
Afo_R014628 Aptenodytes forsteri Afo_R014628 I
Alligator_sinensis_CCG012951.1 Alligator sinensis Alligator_sinensis_CCG012951.1 I
B5DE03 Xenopus tropicalis B5DE03 I
B7ZSG3 Xenopus laevis B7ZSG3 I
ENSACAG00000002480 Anolis carolinensis ENSACAG00000002480 I
ENSAMEG00000006957 Ailuropoda melanoleuca ENSAMEG00000006957 I
ENSAMXG00000013017 Astyanax mexicanus ENSAMXG00000013017 I
ENSAPLG00000005775 Anas platyrhynchos ENSAPLG00000005775 I
ENSCSAG00000005257 Chlorocebus sabaeus ENSCSAG00000005257 I
ENSECAG00000022308 Equus caballus ENSECAG00000022308 I
ENSEEUG00000007221 Erinaceus europaeus ENSEEUG00000007221 I
ENSFALG00000010820 Ficedula albicollis ENSFALG00000010820 I
ENSGMOG00000012296 Gadus morhua ENSGMOG00000012296 I
ENSLACG00000016378 Latimeria chalumnae ENSLACG00000016378 I
ENSLOCG00000004537 Lepisosteus oculatus ENSLOCG00000004537 I
ENSMGAG00000001489 Meleagris gallopavo ENSMGAG00000001489 I
ENSMPUG00000011307 Mustela putorius furo ENSMPUG00000011307 I
ENSNLEG00000017890 Nomascus leucogenys ENSNLEG00000017890 I
ENSOANG00000015147 Ornithorhynchus anatinus ENSOANG00000015147 I
ENSOARG00000016334 Ovis aries ENSOARG00000016334 I
ENSONIG00000005545 Oreochromis niloticus ENSONIG00000005545 I
ENSONIG00000011043 Oreochromis niloticus ENSONIG00000011043 I
ENSOPRG00000015709 Ochotona princeps ENSOPRG00000015709 I
ENSP00000331327 Macaca fascicularis ENSP00000331327 I
ENSP00000331327-D1 Bos grunniens ENSP00000331327-D1 I
ENSPANG00000019482 Papio anubis ENSPANG00000019482 I
ENSPFOG00000017089 Poecilia formosa ENSPFOG00000017089 N
ENSPMAG00000008950 Petromyzon marinus ENSPMAG00000008950 I
ENSPPYG00000029822 Pongo abelii ENSPPYG00000029822 I
ENSPSIG00000013679 Pelodiscus sinensis ENSPSIG00000013679 I
ENSSARG00000000207 Sorex araneus ENSSARG00000000207 I
ENSSHAG00000017390 Sarcophilus harrisii ENSSHAG00000017390 I
ENSSTOG00000023716 Ictidomys tridecemlineatus ENSSTOG00000023716 I
ENSVPAG00000007788 Vicugna pacos ENSVPAG00000007788 I
ENSXMAG00000005139 Xiphophorus maculatus ENSXMAG00000005139 I
fgenesh2_pg.scaffold_80000039 Branchiostoma floridae fgenesh2_pg.scaffold_80000039 I
fgenesh2_pm.scaffold_110000013 Branchiostoma floridae fgenesh2_pm.scaffold_110000013 I
Gfo_R001970 Geospiza fortis Gfo_R001970 I
Pvit_09510 Pogona vitticeps Pvit_09510 I
wt1 Xenopus tropicalis XB-GENE-484999 I
WT1 Pan troglodytes ENSPTRG00000003476 I
WT1 Otolemur garnettii ENSOGAG00000007118 I
WT1 Taeniopygia guttata ENSTGUG00000004906 I
Wt1 Rattus norvegicus ENSRNOG00000013074 I
WT1 Sus scrofa ENSSSCG00000013316 I
wt1 Oryzias latipes ENSORLG00000012424 I
WT1 Callithrix jacchus ENSCJAG00000005900 I
WT1 Choloepus hoffmanni ENSCHOG00000006244 I
WT1 Canis familiaris ENSCAFG00000007426 I
WT1 Dasypus novemcinctus ENSDNOG00000003652 I
Wt1 Dipodomys ordii ENSDORG00000013725 I
WT1 Echinops telfairi ENSETEG00000000684 I
WT1 Felis catus ENSFCAG00000000308 I
WT1 Homo sapiens ENSG00000184937 D
WT1 Bos taurus ENSBTAG00000047268 I
WT1 Gallus gallus ENSGALG00000012115 I
WT1 Gorilla gorilla ENSGGOG00000011586 I
WT1 Procavia capensis ENSPCAG00000002213 I
WT1 Loxodonta africana ENSLAFG00000006160 I
WT1 Microcebus murinus ENSMICG00000004097 I
WT1 Myotis lucifugus ENSMLUG00000027523 I
WT1 Macaca mulatta ENSMMUG00000009881 I
WT1 Monodelphis domestica ENSMODG00000009646 I
Wt1 Mus musculus ENSMUSG00000016458 D
WT1 Oryctolagus cuniculus ENSOCUG00000005882 I
wt1 Oryzias latipes ENSORLG00000009859 I
wt1.L Xenopus laevis XB-GENE-6252376 I
wt1.S Xenopus laevis XB-GENE-864792 I
wt1a Danio rerio ENSDARG00000031420 I
wt1b Danio rerio ENSDARG00000007990 I
wt1b Gasterosteus aculeatus ENSGACG00000016020 I
wt1b Takifugu rubripes ENSTRUG00000006559 I
wt1b Tetraodon nigroviridis ENSTNIG00000013806 I