CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

VDBG_00047 *(Verticillium albo atrum)* AT hook
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF02178 (AT_hook)	IPR017956	VDBG_00047	T017194_2.00	Broad (2016-May-1)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
NCU01145 M01693_2.00	Neurospora crassa	RWATAWWTNN	NNAWWTATWY	PBM Weirauch et al.(2014) pTH8916	0.991	0.548
HMGA M01671_2.00	Arabidopsis thaliana	NNNNDWAWH	DWTWHNNNN	PBM Weirauch et al.(2014) pTH7395	0.991	0.510
HMG-I Y M02652_2.00	Pisum sativum	NDWVAAANRVMRWMAY	RTKWYKBYNTTTBWHN	SELEX Mathelier et al.(2014) MA0045.1	0.991	0.490
HMGA2 M09771_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HMGA2_01	0.991	0.490
Hmga2 M00751_2.00	Mus musculus	NNNNRHWWNN	NNWWDYNNNN	PBM Weirauch et al.(2013) pTH3046	0.991	0.469
ENSPPYG00000004736 M01685_2.00	Pongo abelii	NNNNDWWW	WWWHNNNN	PBM Weirauch et al.(2014) pTH9279	0.991	0.469
HMGA1 M09769_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HMGIY_01	0.991	0.449
HMGA1 M09770_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HMGIY_Q4	0.991	0.449
ANIA_01690 M01675_2.00	Aspergillus nidulans	NNNNRHDDN	NHHDYNNNN	PBM Weirauch et al.(2014) pTH8216	0.991	0.429
FGRRES_05233 M01104_2.00	Fusarium graminearum	NNNDWWAWWH	DWWTWWHNNN	PBM Lambert et al.(2019) pTH11377	0.991	0.408
athp-3 M01691_2.00	Caenorhabditis elegans	NNDDWDH	DHWHHNN	PBM Weirauch et al.(2014) pTH9097	0.991	0.371
NCU05635 M01694_2.00	Neurospora crassa	NNNWWWWNNN	NNNWWWWNNN	PBM Weirauch et al.(2014) pTH8863	0.991	0.367
FGRRES_17512 M01105_2.00	Fusarium graminearum	NNNDNWWWW	WWWWNHNNN	PBM Lambert et al.(2019) pTH11412	0.991	0.347
VIT_08s0007g04020 M01689_2.00	Vitis vinifera	DBNDDDDDDN	NHHHHHHNVH	PBM Weirauch et al.(2014) pTH9295	0.991	0.327
BRADI3G55950 M01673_2.00	Brachypodium distachyon	NNNNRHDDN	NHHDYNNNN	PBM Weirauch et al.(2014) pTH9369	0.991	0.306
OS02G0824300 M01688_2.00	Oryza sativa	NNDWAWWN	NWWTWHNN	PBM Weirauch et al.(2014) pTH8406	0.991	0.306
AHL13 M01672_2.00	Arabidopsis thaliana	NAWWTAWWWN	NWWWTAWWTN	PBM Weirauch et al.(2014) pTH8202	0.991	0.286
TVAG_474020 M01106_2.00	Trichomonas vaginalis	DNWWWAWW	WWTWWWNH	PBM Lambert et al.(2019) pTH11493	0.991	0.286
hmg-12 M01690_2.00	Caenorhabditis elegans	NNAWWTAWWTNN	NNAWWTAWWTNN	PBM Weirauch et al.(2014) pTH8997	0.991	0.284
SUM1 M00008_2.00	Saccharomyces cerevisiae	NNDWWWH	DWWWHNN	PBM Badis et al.(2008) SUM1_2124	0.991	0.245
SUM1 M07439_2.00	Saccharomyces cerevisiae	DWAAATWWN	NWWATTTWH	PBM, CSA and or DIP-chip Mathelier et al.(2014) MA0398.1	0.991	0.245
SUM1 M08478_2.00	Saccharomyces cerevisiae	RYGWCASWAAW	WTTWSTGWCRY	Misc DeBoer et al.(2011) YDR310C_383	0.991	0.245
SUM1 M08479_2.00	Saccharomyces cerevisiae	DWAAATWWN	NWWATTTWH	Misc DeBoer et al.(2011) YDR310C_478	0.991	0.245
Q7DLU9_PEA M09772_2.00	Pisum sativum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$HMGIY_01	0.991	0.224
PK00377.1 M01107_2.00	Cannabis sativa	DAWWWAWW	WWTWWWTH	PBM Lambert et al.(2019) pTH11338	0.991	0.184
BRADI5G22430 M01674_2.00	Brachypodium distachyon	VNRDDDHDD	HHDHHHYNB	PBM Weirauch et al.(2014) pTH9242	0.991	0.163
kmt2cb M01679_2.00	Danio rerio	WWAWAWAT	ATWTWTWW	PBM Weirauch et al.(2014) pTH7876	0.991	0.163
Xrp1 M01686_2.00	Drosophila melanogaster	NNNNDWAWW	WWTWHNNNN	PBM Weirauch et al.(2014) pTH9260	0.991	0.163
MTR_4g101990 M01687_2.00	Medicago truncatula	AAAWTAAT	ATTAWTTT	PBM Weirauch et al.(2014) pTH9209	0.991	0.163
PK26376.1 M01108_2.00	Cannabis sativa	DDWWWAWW	WWTWWWHH	PBM Lambert et al.(2019) pTH11261	0.991	0.163
Xrp1 M05900_2.00	Drosophila melanogaster	RTKRYGYAAT	ATTRCRYMAY	B1H Zhu et al.(2011) Xrp1_CG6272_SANGER_5_FBgn0261113	0.991	0.163
ATEG_07399 M01676_2.00	Aspergillus terreus	DHNNHNDWWW	WWWHNDNNDH	PBM Weirauch et al.(2014) pTH9237	0.991	0.143
PHF21A M01103_2.00	Monodelphis domestica	NNNAWATWAATN	NATTWATWTNNN	PBM Lambert et al.(2019) pTH9309	0.991	0.143
PHF21A M01682_2.00	Monodelphis domestica	NNNNNHRH	DYDNNNNN	PBM Weirauch et al.(2014) pTH9335	0.991	0.143
Ahctf1 M00750_2.00	Mus musculus	AAAWAWAW	ATWTWTTT	PBM Weirauch et al.(2013) pTH2361	0.991	0.143
Phf21a M01684_2.00	Mus musculus	NNNATATWAATN	NATTWATATNNN	PBM Weirauch et al.(2014) pTH8550	0.991	0.143
ENSACAG00000014978 M01677_2.00	Anolis carolinensis	NNNNNDRH	DYHNNNNN	PBM Weirauch et al.(2014) pTH9222	0.991	0.122
phf21ab M01678_2.00	Danio rerio	NNNDNADW	WHTNHNNN	PBM Weirauch et al.(2014) pTH9254	0.991	0.122
phf21ab M01680_2.00	Gasterosteus aculeatus	AAAAWAAA	TTTWTTTT	PBM Weirauch et al.(2014) pTH9180	0.991	0.122
PHF21A M01681_2.00	Meleagris gallopavo	HDNHNNDNHD	HDNHNNDNHD	PBM Weirauch et al.(2014) pTH7875	0.991	0.122
Setbp1 M01683_2.00	Mus musculus	NDNNNNNNHN	NDNNNNNNHN	PBM Weirauch et al.(2014) pTH1294	0.991	0.122
estExt_fgeneshNG_pg.C_820014 M01692_2.00	Naegleria gruberi	NNNNNDRH	DYHNNNNN	PBM Weirauch et al.(2014) pTH9380	0.991	0.122
SUM1 M01517_2.00	Saccharomyces cerevisiae	NNNDWAWW	WWTWHNNN	PBM Zhu et al.(2009) Sum1	0.991	0.020
For this family, TFs with SR scores > 0.990* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
VDBG_00047T0	AT hook	11	21	KRGRGRPRKPD
VDBG_00047T0	AT hook	36	47	RRGRGRPKGSLG
VDBG_00047T0	AT hook	70	82	TGTRGRPRKSDAA
VDBG_00047T0	AT hook	101	113	KRGRGRPRKSDAA

Links
Other AT hook family TFs
Other *Verticillium albo atrum* TFs

1072 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
AMTR_s00030p00014690	Amborella trichopoda	AMTR_s00030p00014690	I	0.000
Aquca_023_00109	Aquilegia coerulea	Aquca_023_00109	I	0.000
BGIOSGA034853	Oryza indica	BGIOSGA034853	N	0.000
BGIOSGA037037	Oryza indica	BGIOSGA037037	I	0.000
BRADI4G24937	Brachypodium distachyon	BRADI4G24937	I	0.000
BRADI4G41890	Brachypodium distachyon	BRADI4G41890	I	0.000
Ciclev10001715m.g	Citrus clementina	Ciclev10001715m.g	I	0.000
Cla014037	Citrullus lanatus	Cla014037	I	0.000
Cla015261	Citrullus lanatus	Cla015261	I	0.000
Cucsa.363640	Cucumis sativus	Cucsa.363640	I	0.000
Eucgr.F02715	Eucalyptus grandis	Eucgr.F02715	I	0.000
F775_08606	Aegilops tauschii	F775_08606	I	0.000
Gorai.009G285000	Gossypium raimondii	Gorai.009G285000	I	0.000
GRMZM2G079365	Zea mays	GRMZM2G079365	I	0.000
GRMZM2G136266	Zea mays	GRMZM2G136266	I	0.000
GRMZM2G146020	Zea mays	GRMZM2G146020	I	0.000
GRMZM5G821024	Zea mays	GRMZM5G821024	I	0.000
GSMUA_Achr3G19170_001	Musa acuminata	GSMUA_Achr3G19170_001	I	0.000
GSMUA_Achr6G13040_001	Musa acuminata	GSMUA_Achr6G13040_001	I	0.000
GSMUA_Achr6G18130_001	Musa acuminata	GSMUA_Achr6G18130_001	I	0.000
LPERR11G03390	Leersia perrieri	LPERR11G03390	I	0.000
LPERR12G03530	Leersia perrieri	LPERR12G03530	I	0.000
Lus10029773.g	Linum usitatissimum	Lus10029773.g	I	0.000
Lus10042802.g	Linum usitatissimum	Lus10042802.g	I	0.000
mgf003343m	Mimulus guttatus	mgf003343m	I	0.000
MLOC_71198	Hordeum vulgare	MLOC_71198	I	0.000
OB11G13300	Oryza brachyantha	OB11G13300	I	0.000
OB12G13750	Oryza brachyantha	OB12G13750	I	0.000
OBART11G03920	Oryza barthii	OBART11G03920	I	0.000
OBART12G03760	Oryza barthii	OBART12G03760	I	0.000
OGLUM11G03630	Oryza glumaepatula	OGLUM11G03630	N	0.000
OGLUM12G04480	Oryza glumaepatula	OGLUM12G04480	I	0.000
OLONG_001598	Oryza longistaminata	OLONG_001598	I	0.000
OMERI11G03570	Oryza meridionalis	OMERI11G03570	N	0.000
OMERI12G02030	Oryza meridionalis	OMERI12G02030	I	0.000
ONIVA11G04030	Oryza nivara	ONIVA11G04030	I	0.000
ONIVA12G03450	Oryza nivara	ONIVA12G03450	I	0.000
OPUNC11G03640	Oryza punctata	OPUNC11G03640	N	0.000
orange1.1g019163m.g	Citrus sinensis	orange1.1g019163m.g	I	0.000
ORGLA11G0036500	Oryza glaberrima	ORGLA11G0036500	I	0.000
ORGLA12G0036800	Oryza glaberrima	ORGLA12G0036800	I	0.000
ORUFI11G03840	Oryza rufipogon	ORUFI11G03840	I	0.000
ORUFI12G04380	Oryza rufipogon	ORUFI12G04380	I	0.000
OS11G0160500	Oryza sativa	OS11G0160500	N	0.000
OS12G0162500	Oryza sativa	OS12G0162500	I	0.000
Pavir.Ca00211	Panicum virgatum	Pavir.Ca00211	I	0.000
Pavir.Cb01934	Panicum virgatum	Pavir.Cb01934	N	0.000
Pavir.Ha01827	Panicum virgatum	Pavir.Ha01827	I	0.000
Pavir.Hb01916	Panicum virgatum	Pavir.Hb01916	I	0.000
PK27109.1	Cannabis sativa	PK27109.1	D	0.000
POPTR_0005s21300	Populus trichocarpa	POPTR_0005s21300	I	0.000
SapurV1A.0066s0110	Salix purpurea	SapurV1A.0066s0110	I	0.000
SapurV1A.0256s0010	Salix purpurea	SapurV1A.0256s0010	I	0.000
SapurV1A.1302s0050	Salix purpurea	SapurV1A.1302s0050	I	0.000
Sb05g003810	Sorghum bicolor	Sb05g003810	I	0.000
Sb08g003940	Sorghum bicolor	Sb08g003940	I	0.000
Si010549m.g	Setaria italica	Si010549m.g	I	0.000
Si026605m.g	Setaria italica	Si026605m.g	I	0.000
Traes_4AL_273ACCFFD	Triticum aestivum	Traes_4AL_273ACCFFD	I	0.000
Traes_4BS_ED206A2BB	Triticum aestivum	Traes_4BS_ED206A2BB	I	0.000
Traes_4DS_FE97492F2	Triticum aestivum	Traes_4DS_FE97492F2	I	0.000
Traes_5AL_538EC4C86	Triticum aestivum	Traes_5AL_538EC4C86	I	0.000
Traes_5BL_4700CC358	Triticum aestivum	Traes_5BL_4700CC358	N	0.000
Traes_5DL_841444545	Triticum aestivum	Traes_5DL_841444545	I	0.000
TRIUR3_12877	Triticum urartu	TRIUR3_12877	I	0.000
VIP1	Vitis vinifera	VIT_18s0076g00330	I	0.000

VDBG_00047 (Verticillium albo atrum) AT hook

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1072 Related TFs

VDBG_00047 **(Verticillium albo atrum)
AT hook**