Gorai.013G040000 (Gossypium raimondii)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Gorai.013G040000 T023423_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VRN1
M06704_2.00 		Arabidopsis thaliana
WWWTTTTTTTTTTTTTTTTTTTTTTTKTN
NAMAAAAAAAAAAAAAAAAAAAAAAAWWW		 Dap-seq
OMalley et al.(2016)
VRN1_col_a 		0.772 0.772
VRN1
M06705_2.00 		Arabidopsis thaliana
NWBNTTTTTTTTTTTTKKB
VMMAAAAAAAAAAAANVWN		 Dap-seq
OMalley et al.(2016)
VRN1_colamp_a 		0.772 0.772
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.013G040000.1 B3 5 97
Gorai.013G040000.1 B3 246 341
Gorai.013G040000.2 B3 5 97
Gorai.013G040000.2 B3 240 335

Links

Other B3 family TFs
Other Gossypium raimondii TFs

37 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000006904 Ailuropoda melanoleuca ENSAMEG00000006904 N 0.000
ENSCSAG00000005681 Chlorocebus sabaeus ENSCSAG00000005681 N 0.000
ENSMPUG00000005490 Mustela putorius furo ENSMPUG00000005490 N 0.000
ENSNLEG00000014132 Nomascus leucogenys ENSNLEG00000014132 N 0.000
ENSP00000309606 Macaca fascicularis ENSP00000309606 N 0.000
ENSPANG00000025797 Papio anubis ENSPANG00000025797 N 0.000
ENSPPYG00000003318 Pongo abelii ENSPPYG00000003318 N 0.000
ENSSTOG00000005114 Ictidomys tridecemlineatus ENSSTOG00000005114 N 0.000
Myotis_brandtii_ZNF408_10025512 Myotis brandtii Myotis_brandtii_ZNF408_10025512 N 0.000
Zfp408 Dipodomys ordii ENSDORG00000000387 N 0.000
ZNF408 Pan troglodytes ENSPTRG00000003551 N 0.000
ZNF408 Ochotona princeps ENSOPRG00000009225 N 0.000
ZNF408 Otolemur garnettii ENSOGAG00000034080 N 0.000
ZNF408 Oryctolagus cuniculus ENSOCUG00000010953 N 0.000
ZNF408 Pteropus vampyrus ENSPVAG00000015791 N 0.000
ZNF408 Sus scrofa ENSSSCG00000023097 N 0.000
ZNF408 Myotis lucifugus ENSMLUG00000017629 N 0.000
ZNF408 Macaca mulatta ENSMMUG00000019673 N 0.000
ZNF408 Loxodonta africana ENSLAFG00000027848 N 0.000
ZNF408 Gorilla gorilla ENSGGOG00000010152 N 0.000
ZNF408 Homo sapiens ENSG00000175213 N 0.000
ZNF408 Felis catus ENSFCAG00000029105 N 0.000
ZNF408 Erinaceus europaeus ENSEEUG00000010466 N 0.000
ZNF408 Equus caballus ENSECAG00000010878 N 0.000
ZNF408 Dasypus novemcinctus ENSDNOG00000047669 N 0.000
ZNF408 Callithrix jacchus ENSCJAG00000019859 N 0.000
ZNF408 Choloepus hoffmanni ENSCHOG00000009909 N 0.000
ZNF408 Canis familiaris ENSCAFG00000009143 N 0.000
ZNF408 Bos taurus ENSBTAG00000027557 N 0.000