BPC6 (Arabidopsis lyrata)
BBR

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF06217 (GAGA_bind) IPR010409 fgenesh1_pm.C_scaffold_8000489 T024598_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BPC6
M06719_2.00 		Arabidopsis thaliana
KAGAGAGAGAGAGAGAGAGAG
CTCTCTCTCTCTCTCTCTCTM		 Dap-seq
OMalley et al.(2016)
BPC6_col_a 		0.965 0.965
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pm.C_scaffold_8000489 BBR 1 332

Links

Other BBR family TFs
Other Arabidopsis lyrata TFs

38 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30170.m014145 Ricinus communis 30170.m014145 I 0.750
Bo4g105160 Brassica oleracea Bo4g105160 I 0.750
Bo6g076850 Brassica oleracea Bo6g076850 I 0.877
Bo8g095020 Brassica oleracea Bo8g095020 I 0.705
Bostr.3148s0250 Boechera stricta Bostr.3148s0250 I 0.988
BPC6 Arabidopsis thaliana AT5G42520 D 0.965
Bra003405 Brassica rapa Bra003405 I 0.774
Bra007518 Brassica rapa Bra007518 I 0.758
Bra014504 Brassica rapa Bra014504 I 0.781
Cagra.9562s0001 Capsella grandiflora Cagra.9562s0001 I 0.973
Carubv10026720m.g Capsella rubella Carubv10026720m.g I 0.946
cassava22532.valid.m1 Manihot esculenta cassava22532.valid.m1 I 0.742
chr1.CM0195.10.nd Lotus japonicus chr1.CM0195.10.nd I 0.742
Ciclev10001400m.g Citrus clementina Ciclev10001400m.g I 0.750
Cla022781 Citrullus lanatus Cla022781 I 0.704
Cucsa.159750 Cucumis sativus Cucsa.159750 I 0.700
Eucgr.D01054 Eucalyptus grandis Eucgr.D01054 I 0.723
gene08483-v1.0-hybrid Fragaria vesca gene08483-v1.0-hybrid I 0.738
GLYMA04G02860 Glycine max GLYMA04G02860 I 0.747
GLYMA06G02880 Glycine max GLYMA06G02880 I 0.754
Lus10012389.g Linum usitatissimum Lus10012389.g I 0.742
Lus10024313.g Linum usitatissimum Lus10024313.g I 0.742
MDP0000933138 Malus domestica MDP0000933138 I 0.704
MTR_1g023660 Medicago truncatula MTR_1g023660 I 0.715
Ocbimv22014894m.g Octopus bimaculoides Ocbimv22014894m.g I 1.000
orange1.1g018368m.g Citrus sinensis orange1.1g018368m.g I 0.746
PGSC0003DMG400003719 Solanum tuberosum PGSC0003DMG400003719 I 0.738
PK03443.1 Cannabis sativa PK03443.1 I 0.727
Pm006246 Prunus mume Pm006246 I 0.708
POPTR_0002s02820 Populus trichocarpa POPTR_0002s02820 I 0.777
POPTR_0005s25720 Populus trichocarpa POPTR_0005s25720 I 0.758
PRUPE_ppa008316mg Prunus persica PRUPE_ppa008316mg I 0.727
SapurV1A.0025s0690 Salix purpurea SapurV1A.0025s0690 I 0.762
SapurV1A.0762s0100 Salix purpurea SapurV1A.0762s0100 I 0.729
Solyc04g081170.2 Solanum lycopersicum Solyc04g081170.2 I 0.731
TCM_034171 Theobroma cacao TCM_034171 I 0.731
Thhalv10006075m.g Eutrema salsugineum Thhalv10006075m.g I 0.969
VIT_18s0001g13730 Vitis vinifera VIT_18s0001g13730 I 0.758