CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gorai.012G183200
(
Gossypium raimondii
)
BBR
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF06217 (GAGA_bind)
IPR010409
Gorai.012G183200
T024863_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.012G183200.1
BBR
1
253
MVERDAKSFIPSRDSNLMVTTNTAFHQQDPVVSEAHTPMNYVRDSWIADREKIFSMFPATTPNYAVHPETSAAYSLPILRSPPYSSTRDERVASSVEEPPANKDGVEPKKRQGGAAPKMPKAKKPKKPKENANSTVQRVKSAKKSIVFKINGYDMDISGIPIPVCSCTGTAQQCYRWGFGGWQSACCTTNVSMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAENYNFSNPIDLRSHWARHGTNKFVTIR
Gorai.012G183200.2
BBR
1
253
MVERDAKSFIPSRDSNLMVTTNTAFHQQDPVVSEAHTPMNYVRDSWIADREKIFSMFPATTPNYAVHPETSAAYSLPILRSPPYSSTRDERVASSVEEPPANKDGVEPKKRQGGAAPKMPKAKKPKKPKENANSTVQRVKSAKKSIVFKINGYDMDISGIPIPVCSCTGTAQQCYRWGFGGWQSACCTTNVSMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAENYNFSNPIDLRSHWARHGTNKFVTIR
Gorai.012G183200.3
BBR
1
253
MVERDAKSFIPSRDSNLMVTTNTAFHQQDPVVSEAHTPMNYVRDSWIADREKIFSMFPATTPNYAVHPETSAAYSLPILRSPPYSSTRDERVASSVEEPPANKDGVEPKKRQGGAAPKMPKAKKPKKPKENANSTVQRVKSAKKSIVFKINGYDMDISGIPIPVCSCTGTAQQCYRWGFGGWQSACCTTNVSMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAENYNFSNPIDLRSHWARHGTNKFVTIR
Links
Other
BBR
family TFs
Other
Gossypium raimondii
TFs
9 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
C1orf35
Otolemur garnettii
ENSOGAG00000010978
I
1.000
cassava39873.m1
Manihot esculenta
cassava39873.m1
N
0.706
Gorai.002G171200
Gossypium raimondii
Gorai.002G171200
N
0.776
Gorai.012G183100
Gossypium raimondii
Gorai.012G183100
N
0.910
OMERI10G00680
Oryza meridionalis
OMERI10G00680
I
0.786
RGD1304587
Rattus norvegicus
ENSRNOG00000002944
I
1.000
TCM_011212
Theobroma cacao
TCM_011212
N
0.723
Traes_4BL_011308A76
Triticum aestivum
Traes_4BL_011308A76
I
0.818