CRE29878 (Caenorhabditis remanei)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02892 (zf-BED) IPR003656 CRE29878 T025842_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
bed-3
M00587_2.00 		Caenorhabditis elegans
TCGRGANY
RNTCYCGA		 PBM
Narasimhan et al.(2015)
pTH9056 		1.000 1.000
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CRE29878 BED ZF 135 179

Links

Other BED ZF family TFs
Other Caenorhabditis remanei TFs

39 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ABW97889.1 Hemiselmis andersenii ABW97889.1 N
AFP65672.1 Chroomonas mesostigmatica AFP65672.1 N
CMK044C Cyanidioschyzon merolae CMK044C N
estExt_fgenesh1_pg.C_280046 Physcomitrella patens estExt_fgenesh1_pg.C_280046 N
estExt_Genewise1.C_340313 Physcomitrella patens estExt_Genewise1.C_340313 N
e_gw1.06.00.250.1 Ostreococcus tauri e_gw1.06.00.250.1 N
e_gw1.6.1215.1 Ostreococcus RCC809 e_gw1.6.1215.1 N
fgenesh2_pg.C_Chr_04000345 Micromonas sp RCC299 fgenesh2_pg.C_Chr_04000345 N
Gorai.007G347300 Gossypium raimondii Gorai.007G347300 N
OSTLU_41331 Ostreococcus lucimarinus OSTLU_41331 N
POPTR_0019s06100 Populus trichocarpa POPTR_0019s06100 N
SapurV1A.1189s0050 Salix purpurea SapurV1A.1189s0050 N
SapurV1A.1953s0020 Salix purpurea SapurV1A.1953s0020 N