USF1 (Equus caballus)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSECAG00000004755 T033922_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Usf1
M01732_2.00 		Mus musculus
NRYCACGTGNN
NNCACGTGRYN		 PBM
Weirauch et al.(2014)
pTH4376 		0.914 1.000
USF1
M02792_2.00 		Homo sapiens
RNCACGTGRY
RYCACGTGNY		 SELEX
Jolma et al.(2013)
USF1_1 		0.914 1.000
USF1
M04146_2.00 		Homo sapiens
NVCACGTGVCN
NGBCACGTGBN		 SELEX
Yin et al.(2017)
USF1_FL_HT-SELEX 		0.914 1.000
USF1
M08056_2.00 		Homo sapiens
RGTCACRTGVB
VBCAYGTGACY		 ChIP-seq
Mathelier et al.(2014)
MA0093.2 		0.914 1.000
USF1
M07807_2.00 		Homo sapiens
VGTCACGTGRBSVVV
BBBSVYCACGTGACB		 ChIP-seq
Gerstein et al.(2012)
A549_USF1_HudsonAlpha 		0.914 1.000
USF1
M07808_2.00 		Homo sapiens
VVGTCACGTGVBSVS
SBSVBCACGTGACBB		 ChIP-seq
Gerstein et al.(2012)
GM12878_USF1_HudsonAlpha 		0.914 1.000
USF1
M07809_2.00 		Homo sapiens
RGTCACGTGVBSVNN
NNBSVBCACGTGACY		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_USF1_HudsonAlpha 		0.914 1.000
USF1
M07810_2.00 		Homo sapiens
VGTCACGTGRB
VYCACGTGACB		 ChIP-seq
Gerstein et al.(2012)
HepG2_USF1_HudsonAlpha 		0.914 1.000
USF1
M07811_2.00 		Homo sapiens
NVGTCACGTGVSSV
BSSBCACGTGACBN		 ChIP-seq
Gerstein et al.(2012)
K562_USF1_HudsonAlpha 		0.914 1.000
USF1
M08733_2.00 		Homo sapiens
VGTCACGTGVBS
SVBCACGTGACB		 Misc
Kulakovskiy et al.(2013)
USF1_HUMAN.H11MO.0.A 		0.914 1.000
Usf1
M08756_2.00 		Mus musculus
NNGTCACGTGVBS
SVBCACGTGACNN		 Misc
Kulakovskiy et al.(2013)
USF1_MOUSE.H11MO.0.A 		0.914 1.000
USF1
M09460_2.00 		Homo sapiens
YCACGTGRBN
NVYCACGTGR		 Misc
Heinz et al.(2010)
GM12878-Usf1_GSE32465 		0.914 1.000
USF1
M09867_2.00 		Homo sapiens
NNRYCACGTGRYNN
NNRYCACGTGRYNN		 Transfac
Matys et al.(2006)
V$USF_01 		0.914 1.000
USF1
M09868_2.00 		Homo sapiens
NNRNCAYRTGNYNN
NNRNCAYRTGNYNN		 Transfac
Matys et al.(2006)
V$USF_02 		0.914 1.000
USF1
M09869_2.00 		Homo sapiens
HCACGTGH
DCACGTGD		 Transfac
Matys et al.(2006)
V$USF_C 		0.914 1.000
USF1
M04147_2.00 		Homo sapiens
VHCAYGTGAYN
NRTCACRTGDB		 SELEX
Yin et al.(2017)
USF1_FL_Methyl-HT-SELEX 		0.914 1.000
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSECAP00000004021 bHLH 200 255

Links

Other bHLH family TFs
Other Equus caballus TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA007071 Oryza indica BGIOSGA007071 N
BGIOSGA009257 Oryza indica BGIOSGA009257 N
BGIOSGA016756 Oryza indica BGIOSGA016756 N
BGIOSGA027481 Oryza indica BGIOSGA027481 N
BRADI3G54817 Brachypodium distachyon BRADI3G54817 N
BRADI5G15587 Brachypodium distachyon BRADI5G15587 N
cassava41082.m1 Manihot esculenta cassava41082.m1 N
Eucgr.K03256 Eucalyptus grandis Eucgr.K03256 N
F775_08585 Aegilops tauschii F775_08585 N
F775_17109 Aegilops tauschii F775_17109 N
F775_18200 Aegilops tauschii F775_18200 N
gene08112-v1.0-hybrid Fragaria vesca gene08112-v1.0-hybrid N
GLYMA03G32116 Glycine max GLYMA03G32116 N
GLYMA10G04350 Glycine max GLYMA10G04350 N
GLYMA13G18620 Glycine max GLYMA13G18620 N
GLYMA19G34881 Glycine max GLYMA19G34881 N
Gorai.001G178800 Gossypium raimondii Gorai.001G178800 N
Gorai.001G254300 Gossypium raimondii Gorai.001G254300 N
Gorai.007G147300 Gossypium raimondii Gorai.007G147300 N
GRMZM2G043813 Zea mays GRMZM2G043813 N
GRMZM2G062009 Zea mays GRMZM2G062009 N
GRMZM2G081930 Zea mays GRMZM2G081930 N
GRMZM2G140901 Zea mays GRMZM2G140901 I
GRMZM2G156977 Zea mays GRMZM2G156977 N
GRMZM5G857701 Zea mays GRMZM5G857701 I
GSMUA_Achr11G00880_001 Musa acuminata GSMUA_Achr11G00880_001 N
GSMUA_Achr1G10860_001 Musa acuminata GSMUA_Achr1G10860_001 N
GSMUA_Achr1G20530_001 Musa acuminata GSMUA_Achr1G20530_001 N
GSMUA_Achr5G00500_001 Musa acuminata GSMUA_Achr5G00500_001 N
GSMUA_Achr5G18670_001 Musa acuminata GSMUA_Achr5G18670_001 N
GSMUA_Achr6G31350_001 Musa acuminata GSMUA_Achr6G31350_001 N
GSMUA_Achr8G18980_001 Musa acuminata GSMUA_Achr8G18980_001 N
GSMUA_AchrUn_randomG02760_001 Musa acuminata GSMUA_AchrUn_randomG02760_001 N
LPERR02G30240 Leersia perrieri LPERR02G30240 I
LPERR08G05360 Leersia perrieri LPERR08G05360 N
Lus10003548.g Linum usitatissimum Lus10003548.g N
Lus10033905.g Linum usitatissimum Lus10033905.g N
MDP0000697030 Malus domestica MDP0000697030 N
mgf009162m Mimulus guttatus mgf009162m N
mgf018312m Mimulus guttatus mgf018312m N
MLOC_12466 Hordeum vulgare MLOC_12466 N
MLOC_5165 Hordeum vulgare MLOC_5165 N
MTR_7g097090 Medicago truncatula MTR_7g097090 N
OB0039G10090 Oryza brachyantha OB0039G10090 N
OB02G43380 Oryza brachyantha OB02G43380 N
OB04G25790 Oryza brachyantha OB04G25790 N
OB08G15810 Oryza brachyantha OB08G15810 N
OBART02G05020 Oryza barthii OBART02G05020 N
OBART02G36830 Oryza barthii OBART02G36830 N
OBART04G18700 Oryza barthii OBART04G18700 N
OGLUM02G38020 Oryza glumaepatula OGLUM02G38020 I
OGLUM04G18750 Oryza glumaepatula OGLUM04G18750 N
OGLUM08G06200 Oryza glumaepatula OGLUM08G06200 N
OLONG_011232 Oryza longistaminata OLONG_011232 N
OLONG_016454 Oryza longistaminata OLONG_016454 N
OMERI02G05870 Oryza meridionalis OMERI02G05870 N
OMERI02G34720 Oryza meridionalis OMERI02G34720 N
ONIVA02G05190 Oryza nivara ONIVA02G05190 N
ONIVA02G39640 Oryza nivara ONIVA02G39640 N
ONIVA04G01950 Oryza nivara ONIVA04G01950 N
ONIVA08G05790 Oryza nivara ONIVA08G05790 N
OPUNC02G04160 Oryza punctata OPUNC02G04160 N
OPUNC02G33860 Oryza punctata OPUNC02G33860 N
OPUNC04G16450 Oryza punctata OPUNC04G16450 N
OPUNC08G05520 Oryza punctata OPUNC08G05520 N
ORGLA02G0046100 Oryza glaberrima ORGLA02G0046100 N
ORGLA02G0320500 Oryza glaberrima ORGLA02G0320500 N
ORGLA04G0158100 Oryza glaberrima ORGLA04G0158100 N
ORGLA08G0051100 Oryza glaberrima ORGLA08G0051100 N
ORUFI02G05100 Oryza rufipogon ORUFI02G05100 N
ORUFI02G38340 Oryza rufipogon ORUFI02G38340 N
ORUFI04G20200 Oryza rufipogon ORUFI04G20200 N
ORUFI08G06500 Oryza rufipogon ORUFI08G06500 N
OS02G0810900 Oryza sativa OS02G0810900 N
OS04G0515900 Oryza sativa OS04G0515900 N
OS08G0200600 Oryza sativa OS08G0200600 N
Pavir.Aa00144 Panicum virgatum Pavir.Aa00144 I
Pavir.Aa01668 Panicum virgatum Pavir.Aa01668 N
Pavir.Ab02337 Panicum virgatum Pavir.Ab02337 N
Pavir.Ga01251 Panicum virgatum Pavir.Ga01251 N
Pavir.Gb00655 Panicum virgatum Pavir.Gb00655 N
Pavir.Ib03261 Panicum virgatum Pavir.Ib03261 N
Pavir.J11268 Panicum virgatum Pavir.J11268 N
Pavir.J34679 Panicum virgatum Pavir.J34679 I
PDK_20s1301681g003 Phoenix dactylifera PDK_20s1301681g003 N
PDK_20s1648061g001 Phoenix dactylifera PDK_20s1648061g001 N
PDK_20s1665101g001 Phoenix dactylifera PDK_20s1665101g001 N
PGSC0003DMG400025505 Solanum tuberosum PGSC0003DMG400025505 N
PK19051.1 Cannabis sativa PK19051.1 N
Pm020580 Prunus mume Pm020580 N
PRUPE_ppa009628mg Prunus persica PRUPE_ppa009628mg N
Sb04g026440 Sorghum bicolor Sb04g026440 N
Sb04g036640 Sorghum bicolor Sb04g036640 I
Si010799m.g Setaria italica Si010799m.g N
Si017967m.g Setaria italica Si017967m.g I
Si018001m.g Setaria italica Si018001m.g N
Si036835m.g Setaria italica Si036835m.g N
Solyc06g008360.2 Solanum lycopersicum Solyc06g008360.2 N
Solyc09g025310.2 Solanum lycopersicum Solyc09g025310.2 N
TCM_003998 Theobroma cacao TCM_003998 N
Traes_2BL_D718E27A9 Triticum aestivum Traes_2BL_D718E27A9 N
Traes_6AL_B272C86BE Triticum aestivum Traes_6AL_B272C86BE N
Traes_6AL_B92597EA9 Triticum aestivum Traes_6AL_B92597EA9 N
Traes_6BL_D00F04562 Triticum aestivum Traes_6BL_D00F04562 I
Traes_6DL_1ABE78799 Triticum aestivum Traes_6DL_1ABE78799 N
Traes_6DL_8A1342D56 Triticum aestivum Traes_6DL_8A1342D56 N
TRIUR3_23299 Triticum urartu TRIUR3_23299 N
TRIUR3_32754 Triticum urartu TRIUR3_32754 N
TRIUR3_33179 Triticum urartu TRIUR3_33179 N