CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

clocka *(Takifugu rubripes)* bHLH
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00010 (HLH)	IPR001092	ENSTRUG00000001837	T037821_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Clock M01735_2.00	Mus musculus	NNCAYRTGNN	NNCAYRTGNN	PBM Weirauch et al.(2014) pTH5056	0.914	0.920
CLOCK M02789_2.00	Homo sapiens	DACACGTGYH	DRCACGTGTH	SELEX Jolma et al.(2013) CLOCK_1	0.914	0.920
CLOCK M04129_2.00	Homo sapiens	NMCACGTGYN	NRCACGTGKN	SELEX Yin et al.(2017) CLOCK_eDBD_HT-SELEX	0.914	0.920
CLOCK M08728_2.00	Homo sapiens	DBBBCAYKTGNNHB	VDNNCAMRTGVVVH	Misc Kulakovskiy et al.(2013) CLOCK_HUMAN.H11MO.0.C	0.914	0.920
Clock M08760_2.00	Mus musculus	DBBBCAYKTGNNHB	VDNNCAMRTGVVVH	Misc Kulakovskiy et al.(2013) CLOCK_MOUSE.H11MO.0.C	0.914	0.920
Clock M09473_2.00	Mus musculus	CACGTGNN	NNCACGTG	Misc Heinz et al.(2010) Liver-Clock_GSE39860	0.914	0.920
CLOCK M09849_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CLOCK_Q6	0.914	0.920
CLOCK M04130_2.00	Homo sapiens	NRCRCRTGBH	DVCAYGYGYN	SELEX Yin et al.(2017) CLOCK_eDBD_Methyl-HT-SELEX	0.914	0.920
For this family, TFs with SR scores > 0.838* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ENSTRUP00000004233	bHLH	37	86	KRVSRNKSEKKRRDQFNVLIELGTMLPGNTRKMDKSTILQKSIDFLCKHK
ENSTRUP00000004234	bHLH	37	86	KRVSRNKSEKKRRDQFNVLIELGTMLPGNTRKMDKSTILQKSIDFLCKHK
ENSTRUP00000004235	bHLH	26	75	KRVSRNKSEKKRRDQFNVLIELGTMLPGNTRKMDKSTILQKSIDFLCKHK
ENSTRUP00000004236	bHLH	20	69	KRVSRNKSEKKRRDQFNVLIELGTMLPGNTRKMDKSTILQKSIDFLCKHK
ENSTRUP00000004237	bHLH	25	74	KRVSRNKSEKKRRDQFNVLIELGTMLPGNTRKMDKSTILQKSIDFLCKHK

Links
Other bHLH family TFs
Other *Takifugu rubripes* TFs