PGSC0003DMG400011133 (Solanum tuberosum)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 PGSC0003DMG400011133 T043452_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
e_gw1.209.40.1
M01756_2.00 		Physcomitrella patens
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8070 		0.914 0.979
LRL2
M06738_2.00 		Arabidopsis thaliana
CACGTGSVDMNCACG
CGTGNKHBSCACGTG		 Dap-seq
OMalley et al.(2016)
bHLH69_col_a 		0.914 0.938
SPT
M01709_2.00 		Arabidopsis thaliana
NCACGTGSN
NSCACGTGN		 PBM
Weirauch et al.(2014)
pTH8111 		0.885 0.646
PIF3
M00854_2.00 		Arabidopsis thaliana
CACGTGSNN
NNSCACGTG		 PBM
Franco-Zorrilla et al.(2014)
PIF3 		0.872 0.646
PIF3
M00722_2.00 		Arabidopsis thaliana
NCACRTN
NAYGTGN		 PBM
Chang et al.(2013)
pTH8200 		0.872 0.646
PK05451.1
M01120_2.00 		Cannabis sativa
YCACGTGM
KCACGTGR		 PBM
Lambert et al.(2019)
pTH10100 		0.872 0.646
PIF3
M08045_2.00 		Arabidopsis thaliana
HCACGTGGVH
DBCCACGTGD		 ChIP-seq
Mathelier et al.(2014)
MA0560.1 		0.872 0.646
PIF3
M09780_2.00 		Arabidopsis thaliana
BDRRRVCACGTGRVSHCD
HGDSBYCACGTGBYYYHV		 Transfac
Matys et al.(2006)
P$PIF3_01 		0.872 0.646
PIF3
M09781_2.00 		Arabidopsis thaliana
DDDVCCACGTGGVMVNB
VNBKBCCACGTGGBHHH		 Transfac
Matys et al.(2006)
P$PIF3_02 		0.872 0.646
PIF4
M08046_2.00 		Arabidopsis thaliana
CACGTGSV
BSCACGTG		 ChIP-seq
Mathelier et al.(2014)
MA0561.1 		0.858 0.667
PIF5
M08047_2.00 		Arabidopsis thaliana
YCACRTGS
SCAYGTGR		 ChIP-seq
Mathelier et al.(2014)
MA0562.1 		0.845 0.646
PIF5
M09452_2.00 		Arabidopsis thaliana
NNBCAYGTGV
BCACRTGVNN		 Misc
Heinz et al.(2010)
Arabidopsis-PIF5ox_GSE35062 		0.845 0.646
PIF1
M01703_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8733 		0.845 0.667
PIF1
M08404_2.00 		Arabidopsis thaliana
NCACGTGWSNYNHH
DDNRNSWCACGTGN		 ChIP-chip
Mathelier et al.(2014)
MA0552.1 		0.845 0.667
PIF1
M09783_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PIF1_01 		0.845 0.667
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400028917 bHLH 266 313

Links

Other bHLH family TFs
Other Solanum tuberosum TFs

673 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA022362 Oryza indica BGIOSGA022362 N
BGIOSGA027003 Oryza indica BGIOSGA027003 N
Ca_17354 Cicer arietinum Ca_17354 N
GLYMA09G05840 Glycine max GLYMA09G05840 N
GLYMA09G05850 Glycine max GLYMA09G05850 N
GLYMA09G05860 Glycine max GLYMA09G05860 N
GLYMA15G17090 Glycine max GLYMA15G17090 N
GLYMA15G17100 Glycine max GLYMA15G17100 N
Gorai.006G249900 Gossypium raimondii Gorai.006G249900 N
Gorai.006G250000 Gossypium raimondii Gorai.006G250000 N
Gorai.006G250100 Gossypium raimondii Gorai.006G250100 N
LPERR06G03670 Leersia perrieri LPERR06G03670 N
MTR_2g438180 Medicago truncatula MTR_2g438180 N
OBART06G03990 Oryza barthii OBART06G03990 N
OBART08G14070 Oryza barthii OBART08G14070 N
OGLUM08G14830 Oryza glumaepatula OGLUM08G14830 N
OMERI06G04590 Oryza meridionalis OMERI06G04590 N
ONIVA03G12480 Oryza nivara ONIVA03G12480 N
ONIVA06G20210 Oryza nivara ONIVA06G20210 N
OPUNC06G03800 Oryza punctata OPUNC06G03800 N
ORGLA06G0037100 Oryza glaberrima ORGLA06G0037100 N
ORUFI06G04020 Oryza rufipogon ORUFI06G04020 N
ORUFI08G15950 Oryza rufipogon ORUFI08G15950 N
PGSC0003DMG400044919 Solanum tuberosum PGSC0003DMG400044919 N