Lus10004574.g (Linum usitatissimum)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Lus10004574.g T050145_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK18474.1
M01127_2.00 		Cannabis sativa
NRCACGTGCN
NGCACGTGYN		 PBM
Lambert et al.(2019)
pTH10273 		0.887 0.917
PK18474.1
M01768_2.00 		Cannabis sativa
NCACGWK
MWCGTGN		 PBM
Weirauch et al.(2014)
pTH9589 		0.887 0.917
MYC2
M01699_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8083 		0.887 0.896
MYC4
M01707_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8260 		0.887 0.896
MYC3
M01712_2.00 		Arabidopsis thaliana
MWYGTGNNNN
NNNNCACRWK		 PBM
Weirauch et al.(2014)
pTH8854 		0.887 0.896
OS01G0235700
M09894_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BHLH66_01 		0.887 0.854
BHLH13
M01698_2.00 		Arabidopsis thaliana
MCACGTGV
BCACGTGK		 PBM
Weirauch et al.(2014)
pTH7565 		0.876 0.854
PK09702.1
M01124_2.00 		Cannabis sativa
GCACGTGV
BCACGTGC		 PBM
Lambert et al.(2019)
pTH11374 		0.861 0.646
AT2G22750
M06730_2.00 		Arabidopsis thaliana
MRYGTKDNHCACGTGNN
NNCACGTGDNHMACRYK		 Dap-seq
OMalley et al.(2016)
bHLH18_col_a 		0.855 0.604
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10004574 bHLH 471 518

Links

Other bHLH family TFs
Other Linum usitatissimum TFs

527 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29900.m001559 Ricinus communis 29900.m001559 I
30174.m008755 Ricinus communis 30174.m008755 I
30174.m008756 Ricinus communis 30174.m008756 I
30174.m008759 Ricinus communis 30174.m008759 I
A5JTT1_WHEAT Triticum aestivum A5JTT1_WHEAT D
Aquca_067_00004 Aquilegia coerulea Aquca_067_00004 I
ATERF-1 Arabidopsis lyrata fgenesh2_kg.7__2559__AT4G17500.1 I
ATERF13 Arabidopsis lyrata scaffold_403422.1 I
ATERF2 Arabidopsis lyrata fgenesh2_kg.8__70__AT5G47220.1 I
Bo1g017590 Brassica oleracea Bo1g017590 I
Bo4g024140 Brassica oleracea Bo4g024140 I
Bo4g195220 Brassica oleracea Bo4g195220 I
Bo8g049470 Brassica oleracea Bo8g049470 I
Bo9g001020 Brassica oleracea Bo9g001020 I
Bostr.14547s0008 Boechera stricta Bostr.14547s0008 I
Bostr.30275s0207 Boechera stricta Bostr.30275s0207 I
Bra004873 Brassica rapa Bra004873 I
Bra021047 Brassica rapa Bra021047 I
Bra021048 Brassica rapa Bra021048 I
Bra037630 Brassica rapa Bra037630 I
Cagra.0239s0035 Capsella grandiflora Cagra.0239s0035 I
Cagra.3356s0041 Capsella grandiflora Cagra.3356s0041 I
Cagra.3675s0007 Capsella grandiflora Cagra.3675s0007 I
Cagra.4714s0001 Capsella grandiflora Cagra.4714s0001 I
Carubv10005497m.g Capsella rubella Carubv10005497m.g I
Carubv10005868m.g Capsella rubella Carubv10005868m.g I
Carubv10023967m.g Capsella rubella Carubv10023967m.g I
Carubv10027108m.g Capsella rubella Carubv10027108m.g I
cassava19881.m1 Manihot esculenta cassava19881.m1 I
cassava19882.m1 Manihot esculenta cassava19882.m1 I
cassava19883.m1 Manihot esculenta cassava19883.m1 I
cassava6588.valid.m1 Manihot esculenta cassava6588.valid.m1 I
Ca_02325 Cicer arietinum Ca_02325 I
Ca_06032 Cicer arietinum Ca_06032 I
Ca_06034 Cicer arietinum Ca_06034 I
Ca_17211 Cicer arietinum Ca_17211 I
chr3.CM0080.200.nd Lotus japonicus chr3.CM0080.200.nd I
chr3.CM0080.270.nc Lotus japonicus chr3.CM0080.270.nc I
chr3.CM0080.80.nd Lotus japonicus chr3.CM0080.80.nd I
Ciclev10021132m.g Citrus clementina Ciclev10021132m.g I
Ciclev10022025m.g Citrus clementina Ciclev10022025m.g I
Ciclev10022734m.g Citrus clementina Ciclev10022734m.g I
Cucsa.255330 Cucumis sativus Cucsa.255330 I
Cucsa.260030 Cucumis sativus Cucsa.260030 I
ERF13 Arabidopsis thaliana AT2G44840 D
ERF1A Arabidopsis thaliana AT4G17500 D
Eucgr.E01561 Eucalyptus grandis Eucgr.E01561 I
Eucgr.E01571 Eucalyptus grandis Eucgr.E01571 I
Eucgr.E02651 Eucalyptus grandis Eucgr.E02651 I
Eucgr.E03168 Eucalyptus grandis Eucgr.E03168 I
Eucgr.G00002 Eucalyptus grandis Eucgr.G00002 I
Eucgr.G00388 Eucalyptus grandis Eucgr.G00388 I
Eucgr.G00390 Eucalyptus grandis Eucgr.G00390 I
Eucgr.G00391 Eucalyptus grandis Eucgr.G00391 I
Eucgr.G00392 Eucalyptus grandis Eucgr.G00392 I
Eucgr.G00393 Eucalyptus grandis Eucgr.G00393 I
Eucgr.G00394 Eucalyptus grandis Eucgr.G00394 I
Eucgr.G00396 Eucalyptus grandis Eucgr.G00396 I
Eucgr.G00397 Eucalyptus grandis Eucgr.G00397 I
Eucgr.G00943 Eucalyptus grandis Eucgr.G00943 I
evm.TU.supercontig_101.15 Carica papaya evm.TU.supercontig_101.15 I
e_gw1.60.113.1 Physcomitrella patens e_gw1.60.113.1 I
gene04913-v1.0-hybrid Fragaria vesca gene04913-v1.0-hybrid I
gene04916-v1.0-hybrid Fragaria vesca gene04916-v1.0-hybrid I
gene04917-v1.0-hybrid Fragaria vesca gene04917-v1.0-hybrid I
gene21165-v1.0-hybrid Fragaria vesca gene21165-v1.0-hybrid I
GLYMA03G26310 Glycine max GLYMA03G26310 I
GLYMA03G26437 Glycine max GLYMA03G26437 I
GLYMA03G26520 Glycine max GLYMA03G26520 I
GLYMA09G37780 Glycine max GLYMA09G37780 I
GLYMA18G48730 Glycine max GLYMA18G48730 I
Gorai.004G070500 Gossypium raimondii Gorai.004G070500 I
Gorai.004G070600 Gossypium raimondii Gorai.004G070600 I
Gorai.004G070700 Gossypium raimondii Gorai.004G070700 I
Gorai.004G070800 Gossypium raimondii Gorai.004G070800 I
Gorai.004G165800 Gossypium raimondii Gorai.004G165800 I
Gorai.007G086000 Gossypium raimondii Gorai.007G086000 I
Gorai.008G108400 Gossypium raimondii Gorai.008G108400 I
Gorai.008G108500 Gossypium raimondii Gorai.008G108500 I
Gorai.009G165500 Gossypium raimondii Gorai.009G165500 I
Gorai.010G156600 Gossypium raimondii Gorai.010G156600 I
gw1.105.71.1 Physcomitrella patens gw1.105.71.1 I
LjSGA_078116.1 Lotus japonicus LjSGA_078116.1 I
Lus10013959.g Linum usitatissimum Lus10013959.g I
Lus10016209.g Linum usitatissimum Lus10016209.g I
Lus10016210.g Linum usitatissimum Lus10016210.g I
Lus10016212.g Linum usitatissimum Lus10016212.g I
Lus10016224.g Linum usitatissimum Lus10016224.g I
Lus10025430.g Linum usitatissimum Lus10025430.g I
Lus10029318.g Linum usitatissimum Lus10029318.g I
Lus10029331.g Linum usitatissimum Lus10029331.g I
Lus10029333.g Linum usitatissimum Lus10029333.g I
Lus10042907.g Linum usitatissimum Lus10042907.g I
MDP0000122665 Malus domestica MDP0000122665 I
MDP0000135205 Malus domestica MDP0000135205 I
MDP0000153445 Malus domestica MDP0000153445 I
MDP0000178398 Malus domestica MDP0000178398 I
MDP0000189033 Malus domestica MDP0000189033 I
MDP0000317950 Malus domestica MDP0000317950 I
MDP0000907929 Malus domestica MDP0000907929 I
mgf021215m Mimulus guttatus mgf021215m I
mgf023779m Mimulus guttatus mgf023779m I
MTR_7g081795 Medicago truncatula MTR_7g081795 I
MTR_7g081805 Medicago truncatula MTR_7g081805 I
MTR_7g081815 Medicago truncatula MTR_7g081815 I
MTR_8g006815 Medicago truncatula MTR_8g006815 I
MTR_8g006825 Medicago truncatula MTR_8g006825 I
MTR_8g006840 Medicago truncatula MTR_8g006840 I
orange1.1g032263m.g Citrus sinensis orange1.1g032263m.g I
orange1.1g039729m.g Citrus sinensis orange1.1g039729m.g I
orange1.1g044584m.g Citrus sinensis orange1.1g044584m.g I
orange1.1g047100m.g Citrus sinensis orange1.1g047100m.g I
Pm017696 Prunus mume Pm017696 I
Pm017698 Prunus mume Pm017698 I
Pm017699 Prunus mume Pm017699 I
Pm017700 Prunus mume Pm017700 I
POPTR_0001s11770 Populus trichocarpa POPTR_0001s11770 I
POPTR_0011s06010 Populus trichocarpa POPTR_0011s06010 I
POPTR_0014s04600 Populus trichocarpa POPTR_0014s04600 I
POPTR_0014s04610 Populus trichocarpa POPTR_0014s04610 I
POPTR_0014s04630 Populus trichocarpa POPTR_0014s04630 I
POPTR_0014s04640 Populus trichocarpa POPTR_0014s04640 I
PRUPE_ppa016903mg Prunus persica PRUPE_ppa016903mg I
PRUPE_ppa023698mg Prunus persica PRUPE_ppa023698mg I
PRUPE_ppa025748mg Prunus persica PRUPE_ppa025748mg I
PRUPE_ppb014367mg Prunus persica PRUPE_ppb014367mg I
SapurV1A.0094s0620 Salix purpurea SapurV1A.0094s0620 I
SapurV1A.0124s0170 Salix purpurea SapurV1A.0124s0170 I
SapurV1A.0270s0240 Salix purpurea SapurV1A.0270s0240 I
SapurV1A.0816s0060 Salix purpurea SapurV1A.0816s0060 I
SapurV1A.1065s0020 Salix purpurea SapurV1A.1065s0020 I
scaffold_604310.1 Arabidopsis lyrata scaffold_604310.1 I
TCM_005705 Theobroma cacao TCM_005705 I
TCM_005706 Theobroma cacao TCM_005706 I
TCM_005707 Theobroma cacao TCM_005707 I
Thhalv10001003m.g Eutrema salsugineum Thhalv10001003m.g I
Thhalv10001758m.g Eutrema salsugineum Thhalv10001758m.g I
Thhalv10029212m.g Eutrema salsugineum Thhalv10029212m.g I
VIT_10s0003g00580 Vitis vinifera VIT_10s0003g00580 I
VIT_15s0021g01630 Vitis vinifera VIT_15s0021g01630 I