CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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gw1.105.71.1
(
Physcomitrella patens
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
gw1.105.71.1
T007251_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK17878.1
M01099_2.00
Cannabis sativa
CGCCGYCR
YGRCGGCG
PBM
Lambert et al.(2019)
pTH10133
0.704
0.848
A5JTT1_WHEAT
M09700_2.00
Triticum aestivum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF3_01
0.679
0.717
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
gw1.105.71.1
AP2
1
51
HFRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDTAEGAARAYDTAARALRGS
Links
Other
AP2
family TFs
Other
Physcomitrella patens
TFs
116 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
cassava6588.valid.m1
Manihot esculenta
cassava6588.valid.m1
I
0.742
e_gw1.124.59.1
Physcomitrella patens
e_gw1.124.59.1
I
0.730
estExt_gwp_gw1.C_1270048
Physcomitrella patens
estExt_gwp_gw1.C_1270048
I
0.727
SELMODRAFT_49950
Selaginella moellendorffii
SELMODRAFT_49950
I
0.725
SELMODRAFT_73142
Selaginella moellendorffii
SELMODRAFT_73142
I
0.725
SELMODRAFT_430375
Selaginella moellendorffii
SELMODRAFT_430375
I
0.714
SELMODRAFT_443461
Selaginella moellendorffii
SELMODRAFT_443461
I
0.714
MDP0000133485
Malus domestica
MDP0000133485
I
0.714
MDP0000189033
Malus domestica
MDP0000189033
I
0.714
MDP0000907929
Malus domestica
MDP0000907929
I
0.714
GLYMA03G31640
Glycine max
GLYMA03G31640
I
0.713
GSMUA_Achr3G29290_001
Musa acuminata
GSMUA_Achr3G29290_001
I
0.713
GSMUA_Achr4G06660_001
Musa acuminata
GSMUA_Achr4G06660_001
I
0.713
GSMUA_Achr5G09940_001
Musa acuminata
GSMUA_Achr5G09940_001
I
0.713
VIT_07s0141g00690
Vitis vinifera
VIT_07s0141g00690
I
0.713
VIT_14s0081g00520
Vitis vinifera
VIT_14s0081g00520
I
0.713
PK02998.1
Cannabis sativa
PK02998.1
I
0.713
MDP0000153445
Malus domestica
MDP0000153445
I
0.710
MDP0000317950
Malus domestica
MDP0000317950
I
0.710
GSMUA_Achr6G01440_001
Musa acuminata
GSMUA_Achr6G01440_001
I
0.709
chr1.CM0375.170.nd
Lotus japonicus
chr1.CM0375.170.nd
I
0.709
AMTR_s00002p00264660
Amborella trichopoda
AMTR_s00002p00264660
I
0.708
Aquca_036_00073
Aquilegia coerulea
Aquca_036_00073
I
0.708
Cla020002
Citrullus lanatus
Cla020002
I
0.707
Cucsa.126860
Cucumis sativus
Cucsa.126860
I
0.707
GSMUA_Achr6G00240_001
Musa acuminata
GSMUA_Achr6G00240_001
I
0.706
Ca_12205
Cicer arietinum
Ca_12205
I
0.706
AMTR_s00077p00176570
Amborella trichopoda
AMTR_s00077p00176570
I
0.705
gw1.90.191.1
Physcomitrella patens
gw1.90.191.1
I
0.705
Ciclev10021132m.g
Citrus clementina
Ciclev10021132m.g
I
0.705
GLYMA13G31010
Glycine max
GLYMA13G31010
I
0.704
GLYMA15G08360
Glycine max
GLYMA15G08360
I
0.704
MTR_2g014300
Medicago truncatula
MTR_2g014300
I
0.704
PGSC0003DMG400029713
Solanum tuberosum
PGSC0003DMG400029713
I
0.704
POPTR_0002s04430
Populus trichocarpa
POPTR_0002s04430
I
0.704
POPTR_0004s04700
Populus trichocarpa
POPTR_0004s04700
I
0.704
POPTR_0011s05570
Populus trichocarpa
POPTR_0011s05570
I
0.704
PRUPE_ppa012385mg
Prunus persica
PRUPE_ppa012385mg
I
0.704
PRUPE_ppa022435mg
Prunus persica
PRUPE_ppa022435mg
I
0.704
Solyc02g077840.1
Solanum lycopersicum
Solyc02g077840.1
I
0.704
TCM_029823
Theobroma cacao
TCM_029823
I
0.704
ERF12
Vitis vinifera
VIT_10s0003g00130
I
0.704
Ca_00326
Cicer arietinum
Ca_00326
I
0.704
Pm010083
Prunus mume
Pm010083
I
0.704
Pm020210
Prunus mume
Pm020210
I
0.704
30190.m011323
Ricinus communis
30190.m011323
I
0.704
cassava42971.valid.m1
Manihot esculenta
cassava42971.valid.m1
I
0.704
cassava4486.m1
Manihot esculenta
cassava4486.m1
I
0.704
mgf023367m
Mimulus guttatus
mgf023367m
I
0.704
Ciclev10016982m.g
Citrus clementina
Ciclev10016982m.g
I
0.704
evm.TU.supercontig_27.18
Carica papaya
evm.TU.supercontig_27.18
I
0.704
gene29735-v1.0-hybrid
Fragaria vesca
gene29735-v1.0-hybrid
I
0.704
Gorai.011G029700
Gossypium raimondii
Gorai.011G029700
I
0.704
orange1.1g030994m.g
Citrus sinensis
orange1.1g030994m.g
I
0.704
SapurV1A.0012s0570
Salix purpurea
SapurV1A.0012s0570
I
0.704
SapurV1A.0032s0450
Salix purpurea
SapurV1A.0032s0450
I
0.704
PK17878.1
Cannabis sativa
PK17878.1
D
0.704
chr6.CM0114.130.nc
Lotus japonicus
chr6.CM0114.130.nc
I
0.704
Ciclev10022025m.g
Citrus clementina
Ciclev10022025m.g
I
0.701
orange1.1g047100m.g
Citrus sinensis
orange1.1g047100m.g
I
0.701
SapurV1A.0126s0320
Salix purpurea
SapurV1A.0126s0320
I
0.700
SapurV1A.0126s0330
Salix purpurea
SapurV1A.0126s0330
I
0.700
gene21403-v1.0-hybrid
Fragaria vesca
gene21403-v1.0-hybrid
I
0.699
Aquca_017_00628
Aquilegia coerulea
Aquca_017_00628
I
0.697
PGSC0003DMG400022305
Solanum tuberosum
PGSC0003DMG400022305
I
0.695
29640.m000403
Ricinus communis
29640.m000403
I
0.695
MDP0000236605
Malus domestica
MDP0000236605
I
0.694
MDP0000310904
Malus domestica
MDP0000310904
I
0.694
ERF12
Arabidopsis thaliana
AT1G28360
I
0.693
Bo3g143340
Brassica oleracea
Bo3g143340
I
0.693
Bo5g055840
Brassica oleracea
Bo5g055840
I
0.693
Bo7g048190
Brassica oleracea
Bo7g048190
I
0.693
Bra010881
Brassica rapa
Bra010881
I
0.693
Bra030094
Brassica rapa
Bra030094
I
0.693
Bra032898
Brassica rapa
Bra032898
I
0.693
ERF12
Arabidopsis lyrata
fgenesh2_kg.1__3004__AT1G28360.1
I
0.693
Bostr.15697s0156
Boechera stricta
Bostr.15697s0156
I
0.693
Cagra.1822s0023
Capsella grandiflora
Cagra.1822s0023
I
0.693
Carubv10011585m.g
Capsella rubella
Carubv10011585m.g
I
0.693
Thhalv10009947m.g
Eutrema salsugineum
Thhalv10009947m.g
I
0.693
POPTR_0005s24110
Populus trichocarpa
POPTR_0005s24110
I
0.692
PGSC0003DMG400014417
Solanum tuberosum
PGSC0003DMG400014417
I
0.691
GSMUA_AchrUn_randomG06910_001
Musa acuminata
GSMUA_AchrUn_randomG06910_001
I
0.690
MDP0000457509
Malus domestica
MDP0000457509
I
0.690
BRADI2G52380
Brachypodium distachyon
BRADI2G52380
I
0.689
Si003053m.g
Setaria italica
Si003053m.g
I
0.689
TRAES3BF075600040CFD_g
Triticum aestivum
TRAES3BF075600040CFD_g
I
0.689
MLOC_66843
Hordeum vulgare
MLOC_66843
I
0.688
PRUPE_ppa010804mg
Prunus persica
PRUPE_ppa010804mg
I
0.687
SELMODRAFT_72880
Selaginella moellendorffii
SELMODRAFT_72880
I
0.687
SELMODRAFT_73144
Selaginella moellendorffii
SELMODRAFT_73144
I
0.687
VIT_12s0059g01460
Vitis vinifera
VIT_12s0059g01460
I
0.687
Pm014953
Prunus mume
Pm014953
I
0.687
mgf016282m
Mimulus guttatus
mgf016282m
I
0.687
Ciclev10016668m.g
Citrus clementina
Ciclev10016668m.g
I
0.687
evm.TU.supercontig_12.251
Carica papaya
evm.TU.supercontig_12.251
I
0.687
gene01152-v1.0-hybrid
Fragaria vesca
gene01152-v1.0-hybrid
I
0.687
MDP0000839828
Malus domestica
MDP0000839828
I
0.687
orange1.1g027990m.g
Citrus sinensis
orange1.1g027990m.g
I
0.687
POPTR_0001s36610
Populus trichocarpa
POPTR_0001s36610
I
0.686
SELMODRAFT_59974
Selaginella moellendorffii
SELMODRAFT_59974
I
0.686
mgf007166m
Mimulus guttatus
mgf007166m
I
0.686
Ciclev10022734m.g
Citrus clementina
Ciclev10022734m.g
I
0.686
orange1.1g032263m.g
Citrus sinensis
orange1.1g032263m.g
I
0.686
Solyc07g064890.1
Solanum lycopersicum
Solyc07g064890.1
I
0.684
Ciclev10009361m.g
Citrus clementina
Ciclev10009361m.g
I
0.684
orange1.1g045783m.g
Citrus sinensis
orange1.1g045783m.g
I
0.684
PK25211.1
Cannabis sativa
PK25211.1
I
0.684
Aquca_027_00311
Aquilegia coerulea
Aquca_027_00311
I
0.683
Pm011907
Prunus mume
Pm011907
I
0.682
MDP0000542633
Malus domestica
MDP0000542633
I
0.682
MDP0000629527
Malus domestica
MDP0000629527
I
0.682
TCM_030804
Theobroma cacao
TCM_030804
I
0.681
Solyc10g006130.1
Solanum lycopersicum
Solyc10g006130.1
I
0.680
A5JTT1_WHEAT
Triticum aestivum
A5JTT1_WHEAT
D
0.679
Cla013723
Citrullus lanatus
Cla013723
I
0.677