29640.m000403 (Ricinus communis)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 29640.m000403 T006703_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF7
M01617_2.00 		Arabidopsis thaliana
NGCCGNMNNN
NNNKNCGGCN		 PBM
Weirauch et al.(2014)
pTH7606 		0.745 0.872
ERF7
M06620_2.00 		Arabidopsis thaliana
YHNHYNYYDYCDCCGCCGYCD
HGRCGGCGGHGRHRRNRDNDR		 Dap-seq
OMalley et al.(2016)
ERF7_col_a 		0.745 0.872
ERF7
M06621_2.00 		Arabidopsis thaliana
NNNHNNHNHHDSCGCCGCCRH
DYGGCGGCGSHDDNDNNDNNN		 Dap-seq
OMalley et al.(2016)
ERF7_colamp_a 		0.745 0.872
ERF3
M01607_2.00 		Arabidopsis thaliana
CGCCGSCR
YGSCGGCG		 PBM
Weirauch et al.(2014)
pTH8109 		0.745 0.872
ERF3
M06584_2.00 		Arabidopsis thaliana
YHDYCKCCGCCGYHD
HDRCGGCGGMGRHDR		 Dap-seq
OMalley et al.(2016)
ERF3_col_a 		0.745 0.872
ERF3
M06585_2.00 		Arabidopsis thaliana
NNHHDNHNNYDCCGCCGYCR
YGRCGGCGGHRNNDNHDDNN		 Dap-seq
OMalley et al.(2016)
ERF3_colamp_a 		0.745 0.872
PK17878.1
M01099_2.00 		Cannabis sativa
CGCCGYCR
YGRCGGCG		 PBM
Lambert et al.(2019)
pTH10133 		0.706 0.809
ERF4
M01616_2.00 		Arabidopsis thaliana
VCGCCGCC
GGCGGCGB		 PBM
Weirauch et al.(2014)
pTH8156 		0.684 0.787
ERF4
M06616_2.00 		Arabidopsis thaliana
YCDCCGCCGCCRHHD
HDDYGGCGGCGGHGR		 Dap-seq
OMalley et al.(2016)
ERF4_col_a 		0.684 0.787
ERF4
M06617_2.00 		Arabidopsis thaliana
NHNNHNSCGCCGYCRHHDNN
NNHDDYGRCGGCGSNDNNDN		 Dap-seq
OMalley et al.(2016)
ERF4_colamp_a 		0.684 0.787
ERF13
M01615_2.00 		Arabidopsis thaliana
VGCCGSCD
HGSCGGCB		 PBM
Weirauch et al.(2014)
pTH7283 		0.678 0.702
ERF13
M06612_2.00 		Arabidopsis thaliana
NHDBMGCCGCCDYHD
HDRHGGCGGCKVHDN		 Dap-seq
OMalley et al.(2016)
ERF13_colamp_a 		0.678 0.702
ERF13
M06613_2.00 		Arabidopsis thaliana
HDBMGCCGCCDYHDN
NHDRHGGCGGCKVHD		 Dap-seq
OMalley et al.(2016)
ERF13_col_b 		0.678 0.702
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
29640.m000403 AP2 34 85

Links

Other AP2 family TFs
Other Ricinus communis TFs

229 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PGSC0003DMG400022305 Solanum tuberosum PGSC0003DMG400022305 I 0.820
PGSC0003DMG400014417 Solanum tuberosum PGSC0003DMG400014417 I 0.817
Ciclev10009361m.g Citrus clementina Ciclev10009361m.g I 0.812
orange1.1g045783m.g Citrus sinensis orange1.1g045783m.g I 0.812
Solyc07g064890.1 Solanum lycopersicum Solyc07g064890.1 I 0.810
PK25211.1 Cannabis sativa PK25211.1 I 0.809
Solyc10g006130.1 Solanum lycopersicum Solyc10g006130.1 I 0.806
SapurV1A.0126s0320 Salix purpurea SapurV1A.0126s0320 I 0.805
SapurV1A.0126s0330 Salix purpurea SapurV1A.0126s0330 I 0.805
POPTR_0001s36610 Populus trichocarpa POPTR_0001s36610 I 0.804
evm.TU.supercontig_12.251 Carica papaya evm.TU.supercontig_12.251 I 0.802
PRUPE_ppa010804mg Prunus persica PRUPE_ppa010804mg I 0.800
Pm014953 Prunus mume Pm014953 I 0.800
mgf016282m Mimulus guttatus mgf016282m I 0.800
gene01152-v1.0-hybrid Fragaria vesca gene01152-v1.0-hybrid I 0.800
MDP0000839828 Malus domestica MDP0000839828 I 0.800
VIT_12s0059g01460 Vitis vinifera VIT_12s0059g01460 I 0.799
mgf007166m Mimulus guttatus mgf007166m I 0.799
Ciclev10016668m.g Citrus clementina Ciclev10016668m.g I 0.798
orange1.1g027990m.g Citrus sinensis orange1.1g027990m.g I 0.798
Pm011907 Prunus mume Pm011907 I 0.794
MDP0000542633 Malus domestica MDP0000542633 I 0.794
MDP0000629527 Malus domestica MDP0000629527 I 0.794
Aquca_027_00311 Aquilegia coerulea Aquca_027_00311 I 0.789
evm.TU.supercontig_132.31 Carica papaya evm.TU.supercontig_132.31 I 0.787
Cla005423 Citrullus lanatus Cla005423 I 0.783
cassava43266.valid.m1 Manihot esculenta cassava43266.valid.m1 I 0.781
PRUPE_ppa010893mg Prunus persica PRUPE_ppa010893mg I 0.777
chr2.LjT24P12.30.nd Lotus japonicus chr2.LjT24P12.30.nd I 0.776
Bo6g022410 Brassica oleracea Bo6g022410 I 0.772
GLYMA02G43500 Glycine max GLYMA02G43500 I 0.772
GLYMA14G05470 Glycine max GLYMA14G05470 I 0.772
MDP0000243113 Malus domestica MDP0000243113 I 0.772
MDP0000744693 Malus domestica MDP0000744693 I 0.772
GSMUA_Achr1G18230_001 Musa acuminata GSMUA_Achr1G18230_001 I 0.770
Cucsa.042770 Cucumis sativus Cucsa.042770 I 0.770
Gorai.002G092900 Gossypium raimondii Gorai.002G092900 I 0.768
Lus10029987.g Linum usitatissimum Lus10029987.g I 0.768
Lus10035329.g Linum usitatissimum Lus10035329.g I 0.768
VIT_19s0090g01080 Vitis vinifera VIT_19s0090g01080 I 0.764
Cla003319 Citrullus lanatus Cla003319 I 0.762
Cucsa.190200 Cucumis sativus Cucsa.190200 I 0.762
GSMUA_Achr4G04060_001 Musa acuminata GSMUA_Achr4G04060_001 I 0.760
GSMUA_Achr4G11430_001 Musa acuminata GSMUA_Achr4G11430_001 I 0.760
GLYMA02G46340 Glycine max GLYMA02G46340 I 0.759
Cucsa.139820 Cucumis sativus Cucsa.139820 I 0.755
Gorai.007G312200 Gossypium raimondii Gorai.007G312200 I 0.754
GLYMA14G02360 Glycine max GLYMA14G02360 I 0.749
TCM_030804 Theobroma cacao TCM_030804 I 0.749
Gorai.009G443400 Gossypium raimondii Gorai.009G443400 I 0.749
Thhalv10021393m.g Eutrema salsugineum Thhalv10021393m.g I 0.748
GSMUA_Achr4G06170_001 Musa acuminata GSMUA_Achr4G06170_001 I 0.747
Cagra.0952s0001 Capsella grandiflora Cagra.0952s0001 I 0.746
Carubv10010284m.g Capsella rubella Carubv10010284m.g I 0.746
ERF3 Arabidopsis thaliana AT1G50640 D 0.745
ERF7 Arabidopsis thaliana AT3G20310 D 0.745
Cla013723 Citrullus lanatus Cla013723 I 0.745
cassava34729.m1 Manihot esculenta cassava34729.m1 I 0.745
GSMUA_AchrUn_randomG06910_001 Musa acuminata GSMUA_AchrUn_randomG06910_001 I 0.744
Thhalv10011689m.g Eutrema salsugineum Thhalv10011689m.g I 0.744
PGSC0003DMG400000681 Solanum tuberosum PGSC0003DMG400000681 I 0.743
Ca_17824 Cicer arietinum Ca_17824 I 0.742
Eucgr.A01091 Eucalyptus grandis Eucgr.A01091 I 0.742
LPERR02G05920 Leersia perrieri LPERR02G05920 I 0.741
OPUNC02G05940 Oryza punctata OPUNC02G05940 I 0.741
BRADI3G06562 Brachypodium distachyon BRADI3G06562 I 0.740
GRMZM2G079653 Zea mays GRMZM2G079653 I 0.740
GRMZM2G146028 Zea mays GRMZM2G146028 I 0.740
Sb04g006080 Sorghum bicolor Sb04g006080 I 0.740
Pavir.Aa03102 Panicum virgatum Pavir.Aa03102 I 0.740
Pavir.Ab00660 Panicum virgatum Pavir.Ab00660 I 0.740
GLYMA03G31640 Glycine max GLYMA03G31640 I 0.738
Lus10031526.g Linum usitatissimum Lus10031526.g I 0.737
Solyc07g049490.1 Solanum lycopersicum Solyc07g049490.1 I 0.735
OGLUM02G06860 Oryza glumaepatula OGLUM02G06860 I 0.733
OMERI02G07840 Oryza meridionalis OMERI02G07840 I 0.733
ORGLA02G0063000 Oryza glaberrima ORGLA02G0063000 I 0.733
ORUFI02G06880 Oryza rufipogon ORUFI02G06880 I 0.733
chr1.CM0375.170.nd Lotus japonicus chr1.CM0375.170.nd I 0.733
Bra018864 Brassica rapa Bra018864 I 0.731
ERF3 Arabidopsis lyrata fgenesh2_kg.1__4150__AT1G50640.1 I 0.730
Bostr.26675s0113 Boechera stricta Bostr.26675s0113 I 0.730
AMTR_s00002p00264660 Amborella trichopoda AMTR_s00002p00264660 I 0.726
GSMUA_Achr3G29290_001 Musa acuminata GSMUA_Achr3G29290_001 I 0.726
GSMUA_Achr4G06660_001 Musa acuminata GSMUA_Achr4G06660_001 I 0.726
GSMUA_Achr5G09940_001 Musa acuminata GSMUA_Achr5G09940_001 I 0.726
VIT_07s0141g00690 Vitis vinifera VIT_07s0141g00690 I 0.726
VIT_14s0081g00520 Vitis vinifera VIT_14s0081g00520 I 0.726
PK02998.1 Cannabis sativa PK02998.1 I 0.726
Ca_12205 Cicer arietinum Ca_12205 I 0.723
Sb03g037085 Sorghum bicolor Sb03g037085 I 0.722
gene03450-v1.0-hybrid Fragaria vesca gene03450-v1.0-hybrid I 0.722
GSMUA_Achr6G01440_001 Musa acuminata GSMUA_Achr6G01440_001 I 0.721
gw1.90.191.1 Physcomitrella patens gw1.90.191.1 I 0.720
GSMUA_Achr3G13010_001 Musa acuminata GSMUA_Achr3G13010_001 I 0.719
e_gw1.124.59.1 Physcomitrella patens e_gw1.124.59.1 I 0.719
estExt_gwp_gw1.C_1270048 Physcomitrella patens estExt_gwp_gw1.C_1270048 I 0.719
gene21403-v1.0-hybrid Fragaria vesca gene21403-v1.0-hybrid I 0.719
Pavir.Eb03165 Panicum virgatum Pavir.Eb03165 I 0.719
POPTR_0002s04430 Populus trichocarpa POPTR_0002s04430 I 0.717
PRUPE_ppa022435mg Prunus persica PRUPE_ppa022435mg I 0.717
SELMODRAFT_49950 Selaginella moellendorffii SELMODRAFT_49950 I 0.717
SELMODRAFT_73142 Selaginella moellendorffii SELMODRAFT_73142 I 0.717
Pm020210 Prunus mume Pm020210 I 0.717
Aquca_017_00628 Aquilegia coerulea Aquca_017_00628 I 0.715
Cagra.0316s0033 Capsella grandiflora Cagra.0316s0033 I 0.715
Carubv10014475m.g Capsella rubella Carubv10014475m.g I 0.715
GLYMA18G10290 Glycine max GLYMA18G10290 I 0.714
Gorai.013G169500 Gossypium raimondii Gorai.013G169500 I 0.714
GLYMA06G44430 Glycine max GLYMA06G44430 I 0.713
GLYMA12G13315 Glycine max GLYMA12G13315 I 0.713
GLYMA08G43300 Glycine max GLYMA08G43300 I 0.711
Aquca_036_00073 Aquilegia coerulea Aquca_036_00073 I 0.709
GSMUA_Achr6G00240_001 Musa acuminata GSMUA_Achr6G00240_001 I 0.708
gene29735-v1.0-hybrid Fragaria vesca gene29735-v1.0-hybrid I 0.708
SELMODRAFT_129122 Selaginella moellendorffii SELMODRAFT_129122 I 0.707
SELMODRAFT_17648 Selaginella moellendorffii SELMODRAFT_17648 I 0.707
SELMODRAFT_430375 Selaginella moellendorffii SELMODRAFT_430375 I 0.707
SELMODRAFT_443461 Selaginella moellendorffii SELMODRAFT_443461 I 0.707
GLYMA13G31010 Glycine max GLYMA13G31010 I 0.706
GLYMA15G08360 Glycine max GLYMA15G08360 I 0.706
MTR_2g014300 Medicago truncatula MTR_2g014300 I 0.706
PGSC0003DMG400029713 Solanum tuberosum PGSC0003DMG400029713 I 0.706
POPTR_0004s04700 Populus trichocarpa POPTR_0004s04700 I 0.706
POPTR_0011s05570 Populus trichocarpa POPTR_0011s05570 I 0.706
PRUPE_ppa012385mg Prunus persica PRUPE_ppa012385mg I 0.706
Solyc02g077840.1 Solanum lycopersicum Solyc02g077840.1 I 0.706
TCM_029823 Theobroma cacao TCM_029823 I 0.706
ERF12 Vitis vinifera VIT_10s0003g00130 I 0.706
Ca_00326 Cicer arietinum Ca_00326 I 0.706
Cla020002 Citrullus lanatus Cla020002 I 0.706
Pm010083 Prunus mume Pm010083 I 0.706
30190.m011323 Ricinus communis 30190.m011323 I 0.706
cassava42971.valid.m1 Manihot esculenta cassava42971.valid.m1 I 0.706
cassava4486.m1 Manihot esculenta cassava4486.m1 I 0.706
Cucsa.126860 Cucumis sativus Cucsa.126860 I 0.706
mgf023367m Mimulus guttatus mgf023367m I 0.706
Ciclev10016982m.g Citrus clementina Ciclev10016982m.g I 0.706
evm.TU.supercontig_27.18 Carica papaya evm.TU.supercontig_27.18 I 0.706
Gorai.011G029700 Gossypium raimondii Gorai.011G029700 I 0.706
MDP0000457509 Malus domestica MDP0000457509 I 0.706
orange1.1g030994m.g Citrus sinensis orange1.1g030994m.g I 0.706
SapurV1A.0012s0570 Salix purpurea SapurV1A.0012s0570 I 0.706
SapurV1A.0032s0450 Salix purpurea SapurV1A.0032s0450 I 0.706
PK17878.1 Cannabis sativa PK17878.1 D 0.706
chr6.CM0114.130.nc Lotus japonicus chr6.CM0114.130.nc I 0.706
POPTR_0005s24110 Populus trichocarpa POPTR_0005s24110 I 0.705
Bostr.19424s0625 Boechera stricta Bostr.19424s0625 I 0.705
Bo3g074840 Brassica oleracea Bo3g074840 I 0.704
Bra001784 Brassica rapa Bra001784 I 0.704
BRADI2G52380 Brachypodium distachyon BRADI2G52380 I 0.704
Si003053m.g Setaria italica Si003053m.g I 0.704
TRAES3BF075600040CFD_g Triticum aestivum TRAES3BF075600040CFD_g I 0.704
MLOC_66843 Hordeum vulgare MLOC_66843 I 0.703
Ca_20544 Cicer arietinum Ca_20544 I 0.702
BRADI2G21067 Brachypodium distachyon BRADI2G21067 I 0.701
cassava6588.valid.m1 Manihot esculenta cassava6588.valid.m1 I 0.701
ATERF-7 Arabidopsis lyrata fgenesh2_kg.3__2255__AT3G20310.1 I 0.699
ERF12 Arabidopsis thaliana AT1G28360 I 0.696
Bo3g143340 Brassica oleracea Bo3g143340 I 0.696
Bo5g055840 Brassica oleracea Bo5g055840 I 0.696
Bo7g048190 Brassica oleracea Bo7g048190 I 0.696
Bra010881 Brassica rapa Bra010881 I 0.696
Bra030094 Brassica rapa Bra030094 I 0.696
Bra032898 Brassica rapa Bra032898 I 0.696
ERF12 Arabidopsis lyrata fgenesh2_kg.1__3004__AT1G28360.1 I 0.696
Bostr.15697s0156 Boechera stricta Bostr.15697s0156 I 0.696
Cagra.1822s0023 Capsella grandiflora Cagra.1822s0023 I 0.696
Carubv10011585m.g Capsella rubella Carubv10011585m.g I 0.696
MDP0000236605 Malus domestica MDP0000236605 I 0.696
MDP0000310904 Malus domestica MDP0000310904 I 0.696
Thhalv10009947m.g Eutrema salsugineum Thhalv10009947m.g I 0.696
fgenesh1_pg.scaffold_6000034 Physcomitrella patens fgenesh1_pg.scaffold_6000034 I 0.695
gw1.105.71.1 Physcomitrella patens gw1.105.71.1 I 0.695
GRMZM2G020150 Zea mays GRMZM2G020150 I 0.694
Bostr.26675s0388 Boechera stricta Bostr.26675s0388 I 0.694
GRMZM2G174347 Zea mays GRMZM2G174347 I 0.693
e_gw1.5.258.1 Physcomitrella patens e_gw1.5.258.1 I 0.691
Pavir.Ea03148 Panicum virgatum Pavir.Ea03148 I 0.691
AMTR_s00077p00176570 Amborella trichopoda AMTR_s00077p00176570 I 0.690
SELMODRAFT_19889 Selaginella moellendorffii SELMODRAFT_19889 I 0.689
SELMODRAFT_59974 Selaginella moellendorffii SELMODRAFT_59974 I 0.689
Lus10035076.g Linum usitatissimum Lus10035076.g I 0.689
chr3.CM0080.270.nc Lotus japonicus chr3.CM0080.270.nc I 0.689
Bo5g109800 Brassica oleracea Bo5g109800 I 0.688
Bra035792 Brassica rapa Bra035792 I 0.688
Pavir.Fb00952 Panicum virgatum Pavir.Fb00952 I 0.688
Pavir.Fb01486 Panicum virgatum Pavir.Fb01486 I 0.688
evm.TU.supercontig_44.73 Carica papaya evm.TU.supercontig_44.73 I 0.686
Gorai.004G032500 Gossypium raimondii Gorai.004G032500 I 0.686
Eucgr.F01164 Eucalyptus grandis Eucgr.F01164 I 0.685
SapurV1A.1244s0010 Salix purpurea SapurV1A.1244s0010 I 0.685
ERF4 Arabidopsis thaliana AT3G15210 D 0.684
Bo2g122260 Brassica oleracea Bo2g122260 I 0.684
Bra036016 Brassica rapa Bra036016 I 0.684
GLYMA06G35710 Glycine max GLYMA06G35710 I 0.684
GLYMA12G35550 Glycine max GLYMA12G35550 I 0.684
GLYMA13G34920 Glycine max GLYMA13G34920 I 0.684
ATERF-4 Arabidopsis lyrata scaffold_301765.1 I 0.684
Eucgr.K00734 Eucalyptus grandis Eucgr.K00734 I 0.684
Pavir.Fa01730 Panicum virgatum Pavir.Fa01730 I 0.684
F775_20810 Aegilops tauschii F775_20810 I 0.683
SELMODRAFT_402810 Selaginella moellendorffii SELMODRAFT_402810 I 0.683
SELMODRAFT_439762 Selaginella moellendorffii SELMODRAFT_439762 I 0.683
Bo1g108970 Brassica oleracea Bo1g108970 I 0.682
Bra038261 Brassica rapa Bra038261 I 0.682
Eucgr.G00002 Eucalyptus grandis Eucgr.G00002 I 0.682
Si036615m.g Setaria italica Si036615m.g I 0.681
e_gw1.487.2.1 Physcomitrella patens e_gw1.487.2.1 I 0.681
Lus10017907.g Linum usitatissimum Lus10017907.g I 0.681
PK23186.1 Cannabis sativa PK23186.1 I 0.681
MTR_3g053690 Medicago truncatula MTR_3g053690 I 0.680
fgenesh2_kg.3__2537__AT3G23220.1 Arabidopsis lyrata fgenesh2_kg.3__2537__AT3G23220.1 I 0.679
ERF13 Arabidopsis thaliana AT2G44840 D 0.678
Bo4g024140 Brassica oleracea Bo4g024140 I 0.678
Bo4g195220 Brassica oleracea Bo4g195220 I 0.678
Bra004873 Brassica rapa Bra004873 I 0.678
Bra037630 Brassica rapa Bra037630 I 0.678
ATERF13 Arabidopsis lyrata scaffold_403422.1 I 0.678
Cagra.0239s0035 Capsella grandiflora Cagra.0239s0035 I 0.678
Carubv10023967m.g Capsella rubella Carubv10023967m.g I 0.678
gene04913-v1.0-hybrid Fragaria vesca gene04913-v1.0-hybrid I 0.678
Thhalv10001758m.g Eutrema salsugineum Thhalv10001758m.g I 0.678
Bo1g102220 Brassica oleracea Bo1g102220 I 0.677
Bra023748 Brassica rapa Bra023748 I 0.677
Cucsa.255330 Cucumis sativus Cucsa.255330 I 0.677
estExt_Genemark1.C_100079 Coccomyxa subellipsoidea C169 estExt_Genemark1.C_100079 I 0.677
evm.TU.supercontig_83.80 Carica papaya evm.TU.supercontig_83.80 I 0.677
estExt_fgeneshCV_pg.C_120242 Chlorella vulgaris estExt_fgeneshCV_pg.C_120242 I 0.677