Pavir.Ia01219 (Panicum virgatum)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Pavir.Ia01219 T050818_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PIF4
M08046_2.00 		Arabidopsis thaliana
CACGTGSV
BSCACGTG		 ChIP-seq
Mathelier et al.(2014)
MA0561.1 		0.911 0.900
PIF5
M08047_2.00 		Arabidopsis thaliana
YCACRTGS
SCAYGTGR		 ChIP-seq
Mathelier et al.(2014)
MA0562.1 		0.898 0.880
PIF5
M09452_2.00 		Arabidopsis thaliana
NNBCAYGTGV
BCACRTGVNN		 Misc
Heinz et al.(2010)
Arabidopsis-PIF5ox_GSE35062 		0.898 0.880
PIF3
M00854_2.00 		Arabidopsis thaliana
CACGTGSNN
NNSCACGTG		 PBM
Franco-Zorrilla et al.(2014)
PIF3 		0.871 0.940
PIF3
M00722_2.00 		Arabidopsis thaliana
NCACRTN
NAYGTGN		 PBM
Chang et al.(2013)
pTH8200 		0.871 0.940
PK05451.1
M01120_2.00 		Cannabis sativa
YCACGTGM
KCACGTGR		 PBM
Lambert et al.(2019)
pTH10100 		0.871 0.940
PIF3
M08045_2.00 		Arabidopsis thaliana
HCACGTGGVH
DBCCACGTGD		 ChIP-seq
Mathelier et al.(2014)
MA0560.1 		0.871 0.940
PIF3
M09780_2.00 		Arabidopsis thaliana
BDRRRVCACGTGRVSHCD
HGDSBYCACGTGBYYYHV		 Transfac
Matys et al.(2006)
P$PIF3_01 		0.871 0.940
PIF3
M09781_2.00 		Arabidopsis thaliana
DDDVCCACGTGGVMVNB
VNBKBCCACGTGGBHHH		 Transfac
Matys et al.(2006)
P$PIF3_02 		0.871 0.940
PIF1
M01703_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8733 		0.868 0.880
PIF1
M08404_2.00 		Arabidopsis thaliana
NCACGTGWSNYNHH
DDNRNSWCACGTGN		 ChIP-chip
Mathelier et al.(2014)
MA0552.1 		0.868 0.880
PIF1
M09783_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PIF1_01 		0.868 0.880
SPT
M01709_2.00 		Arabidopsis thaliana
NCACGTGSN
NSCACGTGN		 PBM
Weirauch et al.(2014)
pTH8111 		0.860 0.860
e_gw1.209.40.1
M01756_2.00 		Physcomitrella patens
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8070 		0.854 0.620
LRL2
M06738_2.00 		Arabidopsis thaliana
CACGTGSVDMNCACG
CGTGNKHBSCACGTG		 Dap-seq
OMalley et al.(2016)
bHLH69_col_a 		0.854 0.580
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ia01219.1.p bHLH 343 392

Links

Other bHLH family TFs
Other Panicum virgatum TFs

491 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL004174 Aedes aegypti AAEL004174 I
AAEL013504 Aedes aegypti AAEL013504 I
AALB004781 Anopheles albimanus AALB004781 I
AARA007626 Anopheles arabiensis AARA007626 I
AATE019626 Anopheles atroparvus AATE019626 I
ACHR005948 Anopheles christyi ACHR005948 I
ACOM024997 Anopheles coluzzii ACOM024997 I
ACUA013605 Anopheles culicifacies ACUA013605 I
ADAC005019 Anopheles darlingi ADAC005019 I
ADIR008855 Anopheles dirus ADIR008855 I
AEPI008783 Anopheles epiroticus AEPI008783 I
AFAF003219 Anopheles farauti AFAF003219 I
AFUN010103 Anopheles funestus AFUN010103 I
AGAP005895 Anopheles gambiae AGAP005895 I
AGAP005896 Anopheles gambiae AGAP005896 I
AMEC016175 Anopheles melas AMEC016175 I
AMEM015129 Anopheles merus AMEM015129 I
AMIN011562 Anopheles minimus AMIN011562 I
AQUA010990 Anopheles quadriannulatus AQUA010990 I
ASIS012852 Anopheles sinensis ASIS012852 I
ASTEI02809 Anopheles stephensi ASTEI02809 I
CPIJ004922 Culex quinquefasciatus CPIJ004922 I
CpipJ_CPIJ004922 Culex pipiens CpipJ_CPIJ004922 I
Doc1 Drosophila melanogaster FBgn0028789 I
Doc2 Drosophila melanogaster FBgn0035956 D
Doc3 Drosophila melanogaster FBgn0035954 D
ENSGMOG00000002896 Gadus morhua ENSGMOG00000002896 I
ENSGMOG00000012645 Gadus morhua ENSGMOG00000012645 I
ENSONIG00000003732 Oreochromis niloticus ENSONIG00000003732 I
ENSONIG00000010454 Oreochromis niloticus ENSONIG00000010454 I
ENSPFOG00000016384 Poecilia formosa ENSPFOG00000016384 I
ENSXMAG00000005715 Xiphophorus maculatus ENSXMAG00000005715 I
GA18655 Drosophila pseudoobscura FBgn0078655 I
GA18682 Drosophila pseudoobscura FBgn0078682 I
GA18721 Drosophila pseudoobscura FBgn0078721 I
GD14148 Drosophila simulans FBgn0185836 I
GD14149 Drosophila simulans FBgn0185837 I
GE20799 Drosophila yakuba FBgn0238093 I
GE20800 Drosophila yakuba FBgn0238094 I
GE21264 Drosophila yakuba FBgn0238533 I
GF10130 Drosophila ananassae FBgn0087171 I
GF24374 Drosophila ananassae FBgn0101368 I
GF24375 Drosophila ananassae FBgn0101369 I
GG14368 Drosophila erecta FBgn0106627 I
GG14369 Drosophila erecta FBgn0106628 I
GG15041 Drosophila erecta FBgn0107295 I
GH14955 Drosophila grimshawi FBgn0122430 I
GH16540 Drosophila grimshawi FBgn0124011 I
GH16541 Drosophila grimshawi FBgn0124012 I
GI11482 Drosophila mojavensis FBgn0134242 I
GI13829 Drosophila mojavensis FBgn0136583 I
GI13831 Drosophila mojavensis FBgn0136585 I
GJ11695 Drosophila virilis FBgn0198949 I
GJ11697 Drosophila virilis FBgn0198951 I
GK12279 Drosophila willistoni FBgn0214289 I
GK12352 Drosophila willistoni FBgn0214362 I
GK12353 Drosophila willistoni FBgn0214363 I
GL15033 Drosophila persimilis FBgn0152637 I
GL15034 Drosophila persimilis FBgn0152638 I
GL15081 Drosophila persimilis FBgn0152685 I
GM24895 Drosophila sechellia FBgn0179757 I
GM25112 Drosophila sechellia FBgn0179973 I
GM25113 Drosophila sechellia FBgn0179974 I
HMEL012563 Heliconius melpomene HMEL012563 I
LCUP005945 Lucilia cuprina LCUP005945 I
LCUP005946 Lucilia cuprina LCUP005946 I
LCUP005947 Lucilia cuprina LCUP005947 I
MDOA006037 Musca domestica MDOA006037 I
MDOA015287 Musca domestica MDOA015287 I
MESCA005219 Megaselia scalaris MESCA005219 I
TBX2 Takifugu rubripes ENSTRUG00000008297 D
TBX2 Oryzias latipes ENSORLG00000014792 I
TBX2 Gasterosteus aculeatus ENSGACG00000013575 D