SNAPOd2T00003591001 (Oikopleura dioica)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 SNAPOd2T00003591001 T051736_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tcf3
M00753_2.00 		Mus musculus
VCACCTGBN
NVCAGGTGB		 PBM
Weirauch et al.(2013)
pTH3866 		0.858 0.827
Tcf3
M01723_2.00 		Mus musculus
NNVCACSTGB
VCASGTGBNN		 PBM
Weirauch et al.(2014)
pTH4580 		0.858 0.827
Tcf3
M00118_2.00 		Mus musculus
VCAYCTGB
VCAGRTGB		 PBM
Badis et al.(2009)
Tcfe2a_3865 		0.858 0.827
Tcf12
M01740_2.00 		Mus musculus
NVCAYCTGB
VCAGRTGBN		 PBM
Weirauch et al.(2014)
pTH5071 		0.858 0.808
TCF12
M04137_2.00 		Homo sapiens
VCACSTGB
VCASGTGB		 SELEX
Yin et al.(2017)
TCF12_eDBD_HT-SELEX 		0.858 0.808
Tcf12
M08062_2.00 		Mus musculus
RRCAGCTGNNN
NNNCAGCTGYY		 ChIP-seq
Mathelier et al.(2014)
MA0521.1 		0.858 0.808
TCF12
M07805_2.00 		Homo sapiens
NVDSCAGSTGB
VCASCTGSHBN		 ChIP-seq
Gerstein et al.(2012)
GM12878_TCF12_HudsonAlpha 		0.858 0.808
TCF12
M07806_2.00 		Homo sapiens
VCASCTGB
VCAGSTGB		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_TCF12_HudsonAlpha 		0.858 0.808
TCF12
M08731_2.00 		Homo sapiens
CMCASCTGSH
DSCAGSTGKG		 Misc
Kulakovskiy et al.(2013)
HTF4_HUMAN.H11MO.0.A 		0.858 0.808
Tcf12
M08762_2.00 		Mus musculus
VMCASCTGSH
DSCAGSTGKB		 Misc
Kulakovskiy et al.(2013)
HTF4_MOUSE.H11MO.0.A 		0.858 0.808
TCF12
M09458_2.00 		Homo sapiens
NNVCAGCTGB
VCAGCTGBNN		 Misc
Heinz et al.(2010)
GM12878-Tcf12_GSE32465 		0.858 0.808
TCF12
M09858_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HEB_Q6 		0.858 0.808
TCF12
M09859_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HTF4_Q2 		0.858 0.808
TCF12
M09860_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_01 		0.858 0.808
TCF12
M09861_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_03 		0.858 0.808
TCF12
M09862_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_05 		0.858 0.808
TCF12
M04138_2.00 		Homo sapiens
NCAYCTGN
NCAGRTGN		 SELEX
Yin et al.(2017)
TCF12_eDBD_Methyl-HT-SELEX 		0.858 0.808
Tcf4
M01750_2.00 		Mus musculus
VCAGVTGBN
NVCABCTGB		 PBM
Weirauch et al.(2014)
pTH5101 		0.855 0.808
TCF4
M02807_2.00 		Homo sapiens
HRCACCTGBN
NVCAGGTGYD		 SELEX
Jolma et al.(2013)
TCF4_1 		0.855 0.808
TCF4
M02808_2.00 		Homo sapiens
NVCACCTBBN
NVVAGGTGBN		 SELEX
Jolma et al.(2013)
TCF4_2 		0.855 0.808
TCF4
M02728_2.00 		Homo sapiens
RCACCTG
CAGGTGY		 SELEX
Jolma et al.(2010)
TCF4_dimer 		0.855 0.808
TCF4
M04214_2.00 		Homo sapiens
VCACCTGB
VCAGGTGB		 SELEX
Yin et al.(2017)
TCF4_eDBD_HT-SELEX 		0.855 0.808
Tcf4
M08775_2.00 		Mus musculus
HRCACCTGB
VCAGGTGYD		 Misc
Kulakovskiy et al.(2013)
ITF2_MOUSE.H11MO.0.B 		0.855 0.808
TCF4
M09461_2.00 		Homo sapiens
ASWTCAAAGRVN
NBYCTTTGAWST		 Misc
Heinz et al.(2010)
Hct116-Tcf4_SRA012054 		0.855 0.808
TCF4
M04215_2.00 		Homo sapiens
VCACCTGN
NCAGGTGB		 SELEX
Yin et al.(2017)
TCF4_eDBD_Methyl-HT-SELEX 		0.855 0.808
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SNAPOd2T00003591001 bHLH 20 73

Links

Other bHLH family TFs
Other Oikopleura dioica TFs

161 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O1_06603 Capronia coronata A1O1_06603 I
A1O3_05723 Capronia epimyces A1O3_05723 I
A1O5_08857 Cladophialophora psammophila A1O5_08857 I
A1O7_06270 Cladophialophora yegresii A1O7_06270 I
A1O9_10773 Exophiala aquamarina A1O9_10773 I
ACRE_033680 Acremonium chrysogenum ACRE_033680 I
ANIA_01298 Aspergillus nidulans CADANIAG00001319 D
ARB_00440 Arthroderma benhamiae ARB_00440 I
BBA_08083 Beauveria bassiana BBA_08083 I
BDDG_06829 Blastomyces dermatitidis BDDG_06829 I
CCM_01116 Cordyceps militaris CCM_01116 I
CIMG_10254 Coccidioides immitis CIMG_10254 I
CMQ_1019 Grosmannia clavigera CMQ_1019 N
CPC735_013440 Coccidioides posadasii CPC735_013440 I
F503_06966 Ophiostoma piceae uamh F503_06966 N
G647_06262 Cladophialophora carrionii G647_06262 I
GMDG_01119 Pseudogymnoascus destructans GMDG_01119 I
GSTUM_00003292001 Tuber melanosporum GSTUM_00003292001 I
H102_01702 Trichophyton rubrum H102_01702 I
H105_01718 Trichophyton soudanense H105_01718 I
HMPREF1120_04164 Exophiala dermatitidis HMPREF1120_04164 I
HMPREF1541_08750 Cyphellophora europaea HMPREF1541_08750 N
HMPREF1624_02502 Sporothrix schenckii HMPREF1624_02502 N
MCYG_06262 Microsporum canis MCYG_06262 I
MGYG_06696 Microsporum gypseum MGYG_06696 I
MYCTH_2088766 Myceliophthora thermophila MYCTH_2088766 N
OCS_06442 Ophiocordyceps sinensis OCS_06442 I
PAAG_02798 Paracoccidioides sp lutzii PAAG_02798 I
PABG_03267 Paracoccidioides brasiliensis PABG_03267 I
Pc16g06560 Penicillium chrysogenum Pc16g06560 I
PCH_Pc16g06560 Penicillium rubens PCH_Pc16g06560 I
PDIP_40460 Penicillium digitatum PDIP_40460 I
PEX1_052970 Penicillium expansum PEX1_052970 I
PITC_023420 Penicillium italicum PITC_023420 I
PV04_06676 Capronia semiimmersa PV04_06676 I
PV05_08012 Exophiala xenobiotica PV05_08012 I
PV07_03563 Cladophialophora immunda PV07_03563 I
PV08_08114 Exophiala spinifera PV08_08114 I
PV09_02314 Verruconis gallopava PV09_02314 N
PV11_07531 Exophiala sideris PV11_07531 I
PVAR5_5311 Byssochlamys spectabilis PVAR5_5311 I
SPBR_02720 Sporothrix brasiliensis SPBR_02720 N
THITE_2113068 Thielavia terrestris THITE_2113068 I
TRIATDRAFT_148632 Trichoderma atroviride TRIATDRAFT_148632 I
TRV_02680 Trichophyton verrucosum TRV_02680 I
U727_0043047031 Penicillium solitum U727_0043047031 I
UCREL1_1818 Eutypa lata UCREL1_1818 I
UCRPA7_7634 Togninia minima UCRPA7_7634 N
UREG_03477 Uncinocarpus reesii UREG_03477 I
V499_08351 Pseudogymnoascus pannorum V499_08351 I
VDAG_08823 Verticillium dahliae VDAG_08823 N
VDBG_05122 Verticillium alfalfae VDBG_05122 N
VDBG_05122 Verticillium albo atrum VDBG_05122 N
Z517_01133 Fonsecaea pedrosoi Z517_01133 I
Z518_05851 Rhinocladiella mackenziei Z518_05851 I
Z519_03796 Cladophialophora bantiana Z519_03796 I