CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Y44A6D.3 *(Caenorhabditis elegans)* Brinker
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF09607 (BrkDBD)	IPR018586	WBGene00012854	T055742_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Y44A6D.3 M00590_2.00	Caenorhabditis elegans	NYGCGCRRN	NYYGCGCRN	PBM Narasimhan et al.(2015) pTH10696	(Direct)	(Direct)
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
For this family, TFs with SR scores > 0.700* will likely have a similar motif*

Experimental Constructs

Motif ID	Domain	From	To	Sequence
M00590_2.00	Brinker	16	69	SRTLKYSIDEKLAIISHAKNHGNRAAGREFNVAESSIREWRKNENKLIHNRDAA

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Y44A6D.3a	Brinker	16	69	SRTLKYSIDEKLAIISHAKNHGNRAAGREFNVAESSIREWRKNENKLIHNRDAA
Y44A6D.3b	Brinker	18	70	TLKQYSIDEKLAIISHAKNHGNRAAGREFNVAESSIREWRKNENKLIHNRDAA
Y44A6D.3c	Brinker	16	69	SRTLQYSIDEKLAIISHAKNHGNRAAGREFNVAESSIREWRKNENKLIHNRDAA

Links
Other Brinker family TFs
Other *Caenorhabditis elegans* TFs