Cagra.13847s0002 (Capsella grandiflora)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00170 (bZIP_1) IPR011616 Cagra.13847s0002 T071488_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VIP1
M06753_2.00 		Arabidopsis thaliana
DTGMCAGCTGKNHH
DDNMCAGCTGKCAH		 Dap-seq
OMalley et al.(2016)
VIP1_colamp_a 		0.608 1.000
VIP1
M06754_2.00 		Arabidopsis thaliana
DTGMCAGCTGDN
NHCAGCTGKCAH		 Dap-seq
OMalley et al.(2016)
VIP1_col_v3a 		0.608 1.000
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.13847s0002.1.p bZIP 193 254
Cagra.13847s0002.1.p bZIP 236 273

Links

Other bZIP family TFs
Other Capsella grandiflora TFs

3 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10009675m.g Capsella rubella Carubv10009675m.g I 0.608
Thhalv10011634m.g Eutrema salsugineum Thhalv10011634m.g I 0.601
VIP1 Arabidopsis thaliana AT1G43700 D 0.608