CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gorai.005G248900
(
Gossypium raimondii
)
bZIP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00170 (bZIP_1)
IPR011616
Gorai.005G248900
T071921_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK20942.1
M01159_2.00
Cannabis sativa
NNNNDAMAKCTRN
NYAGMTKTHNNNN
PBM
Lambert et al.(2019)
pTH11276
0.812
0.841
For this family, TFs with SR scores >
0.782
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.005G248900.1
bZIP
411
473
TDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNN
Gorai.005G248900.2
bZIP
411
473
TDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNN
Gorai.005G248900.3
bZIP
411
467
TDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQVEDLE
Gorai.005G248900.4
bZIP
411
467
TDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQVEDLE
Gorai.005G248900.5
bZIP
411
465
TDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRFS
Gorai.005G248900.6
bZIP
262
324
TDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNN
Gorai.005G248900.7
bZIP
411
473
TDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNN
Gorai.005G248900.8
bZIP
411
473
TDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNN
Links
Other
bZIP
family TFs
Other
Gossypium raimondii
TFs
155 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
augustus_masked-nMf.1.1.scaf03109-processed-gene-0.1
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf03109-processed-gene-0.1
N
0.000
maker-nMf.1.1.scaf04006-snap-gene-0.9
Meloidogyne floridensis
maker-nMf.1.1.scaf04006-snap-gene-0.9
N
0.000
maker-nMf.1.1.scaf16687-augustus-gene-0.4
Meloidogyne floridensis
maker-nMf.1.1.scaf16687-augustus-gene-0.4
N
0.000
Minc07962
Meloidogyne incognita
Minc07962
N
0.000
Minc07964
Meloidogyne incognita
Minc07964
N
0.000