CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

IDD2 *(Arabidopsis thaliana)* C2H2 ZF
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00096 (zf-C2H2)	IPR007087	AT3G50700	T080860_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
IDD2 M01061_2.00	Arabidopsis thaliana	NHTTGTHNNN	NNNDACAADN	PBM Sullivan et al.(2014) pTH7537	(Direct)	(Direct)
IDD2 M06815_2.00	Arabidopsis thaliana	TTTTGTCKTTTWVYD	HRBWAAAMGACAAAA	Dap-seq OMalley et al.(2016) IDD2_col_a	(Direct)	(Direct)
IDD2 M06816_2.00	Arabidopsis thaliana	NNNTTTTGTCKTHTWNBD	HVNWADAMGACAAAANNN	Dap-seq OMalley et al.(2016) IDD2_colamp_a	(Direct)	(Direct)
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
IDD9 M01060_2.00	Arabidopsis thaliana	NNNHRDHNNN	NNNDHYDNNN	PBM Sullivan et al.(2014) pTH7162	0.768	0.924
For this family, TFs with SR scores > 0.755* will likely have a similar motif*

Experimental Constructs

Motif ID	Domain	From	To	Sequence
M01061_2.00	C2H2 ZF	51	73	FVCEICNKGFQRDQNLQLHRRGH
M01061_2.00	C2H2 ZF	127	148	WKCDKCSKKYAVQSDWKAHSKI
M01061_2.00	C2H2 ZF	147	173	KICGTKEYKCDCGTLFSRRDSFITHRA

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
AT3G50700.1	C2H2 ZF	63	85	FVCEICNKGFQRDQNLQLHRRGH
AT3G50700.1	C2H2 ZF	139	160	WKCDKCSKKYAVQSDWKAHSKI
AT3G50700.1	C2H2 ZF	159	185	KICGTKEYKCDCGTLFSRRDSFITHRA

Links
Other C2H2 ZF family TFs
Other *Arabidopsis thaliana* TFs