OMERI04G18430 (Oryza meridionalis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 OMERI04G18430 T124899_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
IDD2
M01061_2.00 		Arabidopsis thaliana
NHTTGTHNNN
NNNDACAADN		 PBM
Sullivan et al.(2014)
pTH7537 		0.803 0.955
IDD2
M06815_2.00 		Arabidopsis thaliana
TTTTGTCKTTTWVYD
HRBWAAAMGACAAAA		 Dap-seq
OMalley et al.(2016)
IDD2_col_a 		0.803 0.955
IDD2
M06816_2.00 		Arabidopsis thaliana
NNNTTTTGTCKTHTWNBD
HVNWADAMGACAAAANNN		 Dap-seq
OMalley et al.(2016)
IDD2_colamp_a 		0.803 0.955
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OMERI04G18430.1 C2H2 ZF 129 151
OMERI04G18430.1 C2H2 ZF 180 201
OMERI04G18430.1 C2H2 ZF 200 226

Links

Other C2H2 ZF family TFs
Other Oryza meridionalis TFs

2 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OMERI02G26740 Oryza meridionalis OMERI02G26740 I 0.827
IDD2 Arabidopsis thaliana AT3G50700 D 0.803