CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra018060
(
Brassica rapa
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
Bra018060
T081921_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
REF6
M08081_2.00
Arabidopsis thaliana
DNCTCTGTTTY
RAAACAGAGNH
ChIP-seq
Mathelier et al.(2014)
MA1415.1
0.812
0.956
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra018060.1-P
C2H2 ZF
1268
1291
YQCDMEGCTMSFSSEKQLSLHKRN
Bra018060.1-P
C2H2 ZF
1292
1315
ICPVKGCGKNFFSHKYLVQHQRVH
Bra018060.1-P
C2H2 ZF
1321
1345
LKCPWKGCKMTFKWAWSRTEHIRVH
Bra018060.1-P
C2H2 ZF
1351
1377
YVCAEPGCSQTFRFVSDFSRHKRKTGH
Links
Other
C2H2 ZF
family TFs
Other
Brassica rapa
TFs
8 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy