REF6 (Arabidopsis thaliana)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 AT3G48430 T080858_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
REF6
M08081_2.00		 Arabidopsis thaliana
DNCTCTGTTTY
RAAACAGAGNH		 ChIP-seq
Mathelier et al.(2014)
MA1415.1		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT3G48430.1 C2H2 ZF 1243 1266
AT3G48430.1 C2H2 ZF 1267 1290
AT3G48430.1 C2H2 ZF 1296 1320
AT3G48430.1 C2H2 ZF 1326 1352
AT3G48430.2 C2H2 ZF 884 907
AT3G48430.2 C2H2 ZF 908 931
AT3G48430.2 C2H2 ZF 937 961
AT3G48430.2 C2H2 ZF 967 993

Links

Other C2H2 ZF family TFs
Other Arabidopsis thaliana TFs

9 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra018060 Brassica rapa Bra018060 I 0.812
REF6 Arabidopsis lyrata fgenesh2_kg.5__1196__AT3G48430.1 I 0.812
scaffold_501791.1 Arabidopsis lyrata scaffold_501791.1 I 0.812
Thhalv10010066m.g Eutrema salsugineum Thhalv10010066m.g I 0.812
Cagra.0807s0010 Capsella grandiflora Cagra.0807s0010 I 0.811
Carubv10016578m.g Capsella rubella Carubv10016578m.g I 0.811
Bo8g076910 Brassica oleracea Bo8g076910 I 0.800
Thhalv10010068m.g Eutrema salsugineum Thhalv10010068m.g I 0.800