REF6 (Arabidopsis lyrata)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 fgenesh2_kg.5__1196__AT3G48430.1 T117359_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
REF6
M08081_2.00 		Arabidopsis thaliana
DNCTCTGTTTY
RAAACAGAGNH		 ChIP-seq
Mathelier et al.(2014)
MA1415.1 		0.812 0.967
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.5__1196__AT3G48430.1 C2H2 ZF 1240 1263
fgenesh2_kg.5__1196__AT3G48430.1 C2H2 ZF 1264 1287
fgenesh2_kg.5__1196__AT3G48430.1 C2H2 ZF 1293 1317
fgenesh2_kg.5__1196__AT3G48430.1 C2H2 ZF 1323 1349

Links

Other C2H2 ZF family TFs
Other Arabidopsis lyrata TFs

8 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
scaffold_501791.1 Arabidopsis lyrata scaffold_501791.1 I 0.827
Bra018060 Brassica rapa Bra018060 I 0.817
Cagra.0807s0010 Capsella grandiflora Cagra.0807s0010 I 0.816
Carubv10016578m.g Capsella rubella Carubv10016578m.g I 0.816
Thhalv10010066m.g Eutrema salsugineum Thhalv10010066m.g I 0.814
REF6 Arabidopsis thaliana AT3G48430 D 0.812
Bo8g076910 Brassica oleracea Bo8g076910 I 0.805
Thhalv10010068m.g Eutrema salsugineum Thhalv10010068m.g I 0.805