Bra038219 (Brassica rapa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Bra038219 T081972_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.822 0.935
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.803 0.870
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.799 0.761
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.799 0.739
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.796 0.826
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.796 0.826
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.796 0.826
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.787 0.804
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.787 0.804
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.776 0.717
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra038219.1-P C2H2 ZF 105 127
Bra038219.1-P C2H2 ZF 160 182

Links

Other C2H2 ZF family TFs
Other Brassica rapa TFs

230 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACAC_0000008501 Angiostrongylus cantonensis ACAC_0000008501 N 0.000
ACOC_0000493901 Angiostrongylus costaricensis ACOC_0000493901 N 0.000
ALUE_0000347301 Ascaris lumbricoides ALUE_0000347301 N 0.000
ANCCAN_14716 Ancylostoma caninum ANCCAN_14716 N 0.000
ANCCEY_13935 Ancylostoma ceylanicum ANCCEY_13935 N 0.000
ANCDUO_02893 Ancylostoma duodenale ANCDUO_02893 N 0.000
ASIM_0001085501 Anisakis simplex ASIM_0001085501 N 0.000
ASU_10686 Ascaris suum ASU_10686 N 0.000
Bm6679 Brugia malayi Bm6679 N 0.000
BXY_1053400 Bursaphelenchus xylophilus BXY_1053400 N 0.000
CBG08484 Caenorhabditis briggsae CBG08484 N 0.000
CBN22200 Caenorhabditis brenneri CBN22200 N 0.000
CJA15586 Caenorhabditis japonica CJA15586 N 0.000
CRE28107 Caenorhabditis remanei CRE28107 N 0.000
DICVIV_02142 Dictyocaulus viviparus DICVIV_02142 N 0.000
DME_0000295201 Dracunculus medinensis DME_0000295201 N 0.000
EEL_0000257001 Elaeophora elaphi EEL_0000257001 N 0.000
GPUH_0000076201 Gongylonema pulchrum GPUH_0000076201 N 0.000
grh-1 Caenorhabditis elegans WBGene00001707 N 0.000
HCOI00042900 Haemonchus contortus HCOI00042900 N 0.000
HPLM_0001248301 Haemonchus placei HPLM_0001248301 N 0.000
LOAG_15534 Loa loa LOAG_15534 N 0.000
MhA1_Contig3342.frz3.fgene1 Meloidogyne hapla MhA1_Contig3342.frz3.fgene1 I 0.000
nAv.1.0.1.g04294 Acanthocheilonema viteae nAv.1.0.1.g04294 N 0.000
NBR_0001111401 Nippostrongylus brasiliensis NBR_0001111401 I 0.000
nDi.2.2.2.g12190 Dirofilaria immitis nDi.2.2.2.g12190 N 0.000
nDi.2.2.2.g12300 Dirofilaria immitis nDi.2.2.2.g12300 I 0.000
NECAME_01451 Necator americanus NECAME_01451 N 0.000
nLs.2.1.2.g09328 Litomosoides sigmodontis nLs.2.1.2.g09328 N 0.000
nOo.2.0.1.g10305 Onchocerca ochengi nOo.2.0.1.g10305 N 0.000
nOo.2.0.1.g10313 Onchocerca ochengi nOo.2.0.1.g10313 N 0.000
nOo.2.0.1.g11935 Onchocerca ochengi nOo.2.0.1.g11935 N 0.000
OESDEN_24323 Oesophagostomum dentatum OESDEN_24323 N 0.000
PTRK_0001384100 Parastrongyloides trichosuri PTRK_0001384100 N 0.000
SMUV_0000990001 Syphacia muris SMUV_0000990001 N 0.000
SPAL_0001441800 Strongyloides papillosus SPAL_0001441800 N 0.000
SSTP_0000594700 Strongyloides stercoralis SSTP_0000594700 N 0.000
TCNE_0000897001 Toxocara canis TCNE_0000897001 N 0.000
TELCIR_08176 Teladorsagia circumcincta TELCIR_08176 N 0.000
WBGene00238278 Onchocerca volvulus WBGene00238278 N 0.000