ZSCAN1 (Callithrix jacchus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSCJAG00000000370 T089182_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZSCAN1
M04483_2.00 		Homo sapiens
NHRCACACVCTGHMAVH
DBTKDCAGBGTGTGYDN		 SELEX
Yin et al.(2017)
ZSCAN1_eDBD_HT-SELEX 		0.778 0.928
ZSCAN1
M04484_2.00 		Homo sapiens
NYGCACACMCTGHMAVH
DBTKDCAGKGTGTGCRN		 SELEX
Yin et al.(2017)
ZSCAN1_eDBD_Methyl-HT-SELEX 		0.778 0.928
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000000614 C2H2 ZF 169 191
ENSCJAP00000000614 C2H2 ZF 197 219
ENSCJAP00000000614 C2H2 ZF 257 279

Links

Other C2H2 ZF family TFs
Other Callithrix jacchus TFs

9 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRADI1G43900 Brachypodium distachyon BRADI1G43900 N
BRADI1G64060 Brachypodium distachyon BRADI1G64060 N
evm.TU.supercontig_49.112 Carica papaya evm.TU.supercontig_49.112 N
F775_29010 Aegilops tauschii F775_29010 N
Gorai.002G219800 Gossypium raimondii Gorai.002G219800 N
Gorai.010G045700 Gossypium raimondii Gorai.010G045700 N
GRMZM2G056099 Zea mays GRMZM2G056099 N
GRMZM2G174284 Zea mays GRMZM2G174284 N
MLOC_64008 Hordeum vulgare MLOC_64008 N
Pavir.Da01921 Panicum virgatum Pavir.Da01921 N
Pavir.J20659 Panicum virgatum Pavir.J20659 N
PGSC0003DMG400016951 Solanum tuberosum PGSC0003DMG400016951 N
POPTR_0002s09130 Populus trichocarpa POPTR_0002s09130 N
SapurV1A.0010s0460 Salix purpurea SapurV1A.0010s0460 N
Sb01g037050 Sorghum bicolor Sb01g037050 N
Si006667m.g Setaria italica Si006667m.g N
Si036527m.g Setaria italica Si036527m.g N
Solyc04g072460.2 Solanum lycopersicum Solyc04g072460.2 N
Solyc12g056860.1 Solanum lycopersicum Solyc12g056860.1 N
TCM_034993 Theobroma cacao TCM_034993 N
Traes_2AL_BD0C7A9A5 Triticum aestivum Traes_2AL_BD0C7A9A5 N
Traes_2BL_9528AAD7C Triticum aestivum Traes_2BL_9528AAD7C N
Traes_4AS_6EDD5ACF7 Triticum aestivum Traes_4AS_6EDD5ACF7 N
Traes_4BL_DAFEC95DD Triticum aestivum Traes_4BL_DAFEC95DD N
Traes_4DL_73DC40D7B Triticum aestivum Traes_4DL_73DC40D7B N
TRIUR3_28368 Triticum urartu TRIUR3_28368 N