PRDM1 (Callithrix jacchus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSCJAG00000006332 T089333_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Prdm1
M08995_2.00 		Mus musculus
NNACTTTCHCTTYY
RRAAGDGAAAGTNN		 Misc
Kulakovskiy et al.(2013)
PRDM1_MOUSE.H11MO.0.A 		0.827 0.991
PRDM1
M02874_2.00 		Homo sapiens
NHACTTTCACTTTYN
NRAAAGTGAAAGTDN		 SELEX
Jolma et al.(2013)
PRDM1_1 		0.825 0.991
PRDM1
M02731_2.00 		Homo sapiens
YACTTTCACTTT
AAAGTGAAAGTR		 SELEX
Jolma et al.(2010)
PRDM1_dimer 		0.825 0.991
PRDM1
M04396_2.00 		Homo sapiens
NYACTTTCVCYN
NRGBGAAAGTRN		 SELEX
Yin et al.(2017)
PRDM1_eDBD_HT-SELEX 		0.825 0.991
PRDM1
M08083_2.00 		Homo sapiens
NHACTTTCHY
RDGAAAGTDN		 ChIP-seq
Mathelier et al.(2014)
MA0508.2 		0.825 0.991
PRDM1
M07845_2.00 		Homo sapiens
NHACTTTCHCTTHYN
NRDAAGDGAAAGTDN		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_PRDM1_Stanford 		0.825 0.991
PRDM1
M08191_2.00 		Homo sapiens
ACTTTCAC
GTGAAAGT		 ChIP-seq
Contrino et al.(2012)
Mv110 		0.825 0.991
PRDM1
M08192_2.00 		Homo sapiens
HRTCACTTT
AAAGTGAYD		 ChIP-seq
Contrino et al.(2012)
Mv112 		0.825 0.991
PRDM1
M08276_2.00 		Homo sapiens
HHNBYVCTTTCHCYY
RRGDGAAAGBRVNDD		 ChIP-seq
Schmitges et al.(2016)
O75626.MEME 		0.825 0.991
PRDM1
M08854_2.00 		Homo sapiens
NNACTTTCHCTTYY
RRAAGDGAAAGTNN		 Misc
Kulakovskiy et al.(2013)
PRDM1_HUMAN.H11MO.0.A 		0.825 0.991
PRDM1
M09500_2.00 		Homo sapiens
ACTTTCHCTKNN
NNMAGDGAAAGT		 Misc
Heinz et al.(2010)
Hela-PRDM1_GSE31477 		0.825 0.991
PRDM1
M10108_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BLIMP1_Q4 		0.825 0.991
PRDM1
M10109_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BLIMP1_Q6_01 		0.825 0.991
PRDM1
M10110_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BLIMP1_Q6 		0.825 0.991
PRDM1
M10111_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PRDM1_03 		0.825 0.991
PRDM1
M04397_2.00 		Homo sapiens
NCACTTTCVCYN
NRGBGAAAGTGN		 SELEX
Yin et al.(2017)
PRDM1_eDBD_Methyl-HT-SELEX 		0.825 0.991
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000011698 C2H2 ZF 441 463
ENSCJAP00000011698 C2H2 ZF 469 491
ENSCJAP00000011698 C2H2 ZF 497 519
ENSCJAP00000011698 C2H2 ZF 525 547
ENSCJAP00000011698 C2H2 ZF 553 574
ENSCJAP00000011710 C2H2 ZF 575 597
ENSCJAP00000011710 C2H2 ZF 603 625
ENSCJAP00000011710 C2H2 ZF 631 653
ENSCJAP00000011710 C2H2 ZF 659 681
ENSCJAP00000011710 C2H2 ZF 687 708
ENSCJAP00000041972 C2H2 ZF 538 560
ENSCJAP00000041972 C2H2 ZF 566 588
ENSCJAP00000041972 C2H2 ZF 594 616
ENSCJAP00000041972 C2H2 ZF 622 644
ENSCJAP00000041972 C2H2 ZF 650 671

Links

Other C2H2 ZF family TFs
Other Callithrix jacchus TFs

43 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R003503 Calypte anna Aan_R003503 I
Aan_R008211 Calypte anna Aan_R008211 I
Afo_R001109 Aptenodytes forsteri Afo_R001109 I
Afo_R013473 Aptenodytes forsteri Afo_R013473 I
Alligator_sinensis_CCG008952.1 Alligator sinensis Alligator_sinensis_CCG008952.1 I
Alligator_sinensis_CCG015471.1 Alligator sinensis Alligator_sinensis_CCG015471.1 I
Brh_R005582 Buceros rhinoceros Brh_R005582 I
Cmyd_10017824 Chelonia mydas Cmyd_10017824 I
ENSAMXG00000024918 Astyanax mexicanus ENSAMXG00000024918 I
ENSAPLG00000002158 Anas platyrhynchos ENSAPLG00000002158 I
ENSCSAG00000013356 Chlorocebus sabaeus ENSCSAG00000013356 I
ENSFALG00000006543 Ficedula albicollis ENSFALG00000006543 I
ENSFALG00000014495 Ficedula albicollis ENSFALG00000014495 I
ENSGALG00000001403 Gallus gallus ENSGALG00000001403 I
ENSGALG00000026718 Gallus gallus ENSGALG00000026718 I
ENSLACG00000007028 Latimeria chalumnae ENSLACG00000007028 I
ENSLOCG00000002169 Lepisosteus oculatus ENSLOCG00000002169 I
ENSMGAG00000005397 Meleagris gallopavo ENSMGAG00000005397 I
ENSMPUG00000003198 Mustela putorius furo ENSMPUG00000003198 I
ENSONIG00000014335 Oreochromis niloticus ENSONIG00000014335 I
ENSPANG00000024301 Papio anubis ENSPANG00000024301 I
ENSPFOG00000020465 Poecilia formosa ENSPFOG00000020465 I
ENSPPYG00000012022 Pongo abelii ENSPPYG00000012022 I
ENSPSIG00000000839 Pelodiscus sinensis ENSPSIG00000000839 I
ENSPSIG00000000992 Pelodiscus sinensis ENSPSIG00000000992 I
ENSPSIG00000007902 Pelodiscus sinensis ENSPSIG00000007902 I
ENSSSCG00000021196 Sus scrofa ENSSSCG00000021196 I
ENSSTOG00000006360 Ictidomys tridecemlineatus ENSSTOG00000006360 I
ENSXMAG00000020311 Xiphophorus maculatus ENSXMAG00000020311 I
Gfo_R010813 Geospiza fortis Gfo_R010813 I
hic1 Takifugu rubripes ENSTRUG00000004590 I
HIC1 Taeniopygia guttata ENSTGUG00000005835 I
hic1 Oryzias latipes ENSORLG00000004895 I
HIC1 Cavia porcellus ENSCPOG00000020382 I
Hic1 Mus musculus ENSMUSG00000043099 D
hic1 Gasterosteus aculeatus ENSGACG00000010848 I
hic1l Gasterosteus aculeatus ENSGACG00000004268 I
hic1l Takifugu rubripes ENSTRUG00000013139 I
hic2 Danio rerio ENSDARG00000100497 I
HIC2 Dasypus novemcinctus ENSDNOG00000003162 I
HIC2 Cavia porcellus ENSCPOG00000001134 I
HIC2 Canis familiaris ENSCAFG00000032493 I
HIC2 Equus caballus ENSECAG00000017997 I
HIC2 Felis catus ENSFCAG00000023903 I
HIC2 Bos taurus ENSBTAG00000005951 I
hic2 Xenopus tropicalis XB-GENE-960044 I
HIC2 Gorilla gorilla ENSGGOG00000006041 I
Hic2 Rattus norvegicus ENSRNOG00000051458 I
HIC2 Meleagris gallopavo ENSMGAG00000000949 I
HIC2 Microcebus murinus ENSMICG00000005154 I
HIC2 Myotis lucifugus ENSMLUG00000009669 I
Hic2 Mus musculus ENSMUSG00000050240 I
HIC2 Oryctolagus cuniculus ENSOCUG00000010516 I
HIC2 Otolemur garnettii ENSOGAG00000030274 I
HIC2 Homo sapiens ENSG00000169635 D
HIC2 Procavia capensis ENSPCAG00000015907 I
HIC2 Pan troglodytes ENSPTRG00000014112 I
HIC2 Pteropus vampyrus ENSPVAG00000000111 I
HIC2 Taeniopygia guttata ENSTGUG00000008699 I
Myotis_brandtii_HIC2_10021802 Myotis brandtii Myotis_brandtii_HIC2_10021802 I
Ogr08090 Ophisaurus gracilis Ogr08090 I
Pvit_18806 Pogona vitticeps Pvit_18806 I
Tal_R003180 Tyto alba Tal_R003180 I
XP_002937184 Xenopus tropicalis XP_002937184 I