GFI1 (Callithrix jacchus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSCJAG00000017609 T089582_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GFI1
M00238_2.00 		Homo sapiens
NWAWMNNNN
NNNNKWTWN		 PBM
Barrera et al.(2016)
GFI1_REF 		0.827 1.000
GFI1
M04507_2.00 		Homo sapiens
BMAATCACDGCNHBBCACTMN
NKAGTGVVDNGCHGTGATTKV		 SELEX
Yin et al.(2017)
GFI1_eDBD_HT-SELEX 		0.827 1.000
Gfi1
M02668_2.00 		Rattus norvegicus
NMAATCWVHS
SDBWGATTKN		 SELEX
Mathelier et al.(2014)
MA0038.1 		0.827 1.000
GFI1
M08905_2.00 		Homo sapiens
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_HUMAN.H11MO.0.C 		0.827 1.000
Gfi1
M08984_2.00 		Mus musculus
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_MOUSE.H11MO.0.C 		0.827 1.000
GFI1
M10235_2.00 		Homo sapiens
NNNNNNNRCHSWGATTTDNNBNNN
NNNVNNHAAATCWSDGYNNNNNNN		 Transfac
Matys et al.(2006)
V$GFI1_01 		0.827 1.000
GFI1
M10236_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1_Q6_01 		0.827 1.000
GFI1
M04508_2.00 		Homo sapiens
NNAGTGVVNHGCWSTGATTKV
BMAATCASWGCDNBBCACTNN		 SELEX
Yin et al.(2017)
GFI1_eDBD_Methyl-HT-SELEX 		0.827 1.000
GFI1
M00236_2.00 		Homo sapiens
NAATMNNNN
NNNNKATTN		 PBM
Barrera et al.(2016)
GFI1_L400F 		0.825 0.993
GFI1
M00237_2.00 		Homo sapiens
ATATCAVD
HBTGATAT		 PBM
Barrera et al.(2016)
GFI1_N382S 		0.790 0.993
GFI1B
M00240_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_REF 		0.781 0.877
GFI1B
M04523_2.00 		Homo sapiens
NMAATCASDGCNNBBCACTNN
NNAGTGVVNNGCHSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_HT-SELEX 		0.781 0.877
Gfi1b
M08098_2.00 		Mus musculus
MAATCWCWGCH
DGCWGWGATTK		 ChIP-seq
Mathelier et al.(2014)
MA0483.1 		0.781 0.877
GFI1B
M08909_2.00 		Homo sapiens
MAATCWSDGY
RCHSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_HUMAN.H11MO.0.A 		0.781 0.877
Gfi1b
M08977_2.00 		Mus musculus
MAAYCACWGH
DCWGWGRTTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_MOUSE.H11MO.0.A 		0.781 0.877
Gfi1b
M09514_2.00 		Mus musculus
MAATCWSWGC
GCWSWGATTK		 Misc
Heinz et al.(2010)
HPC7-Gfi1b_GSE22178 		0.781 0.877
GFI1B
M10243_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_01 		0.781 0.877
GFI1B
M10244_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_Q6 		0.781 0.877
GFI1B
M04524_2.00 		Homo sapiens
NMAATCASWGCDNNBCACTHN
NDAGTGVNNHGCWSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_Methyl-HT-SELEX 		0.781 0.877
sens-2
M06165_2.00 		Drosophila melanogaster
RYAAATCWSDGCAYNC
GNRTGCHSWGATTTRY		 B1H
Zhu et al.(2011)
sens-2_SANGER_2.5_FBgn0051632 		0.774 0.848
GFI1B
M00239_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_A204T 		0.771 0.870
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000032449 C2H2 ZF 255 278
ENSCJAP00000032449 C2H2 ZF 284 306
ENSCJAP00000032449 C2H2 ZF 312 334
ENSCJAP00000032449 C2H2 ZF 340 362
ENSCJAP00000032449 C2H2 ZF 368 390
ENSCJAP00000032449 C2H2 ZF 396 419
ENSCJAP00000042603 C2H2 ZF 253 276
ENSCJAP00000042603 C2H2 ZF 282 304
ENSCJAP00000042603 C2H2 ZF 310 332
ENSCJAP00000042603 C2H2 ZF 338 360
ENSCJAP00000042603 C2H2 ZF 366 388
ENSCJAP00000042603 C2H2 ZF 394 417
ENSCJAP00000047408 C2H2 ZF 255 278
ENSCJAP00000047408 C2H2 ZF 284 306
ENSCJAP00000047408 C2H2 ZF 312 334
ENSCJAP00000047408 C2H2 ZF 340 362
ENSCJAP00000047408 C2H2 ZF 368 390
ENSCJAP00000047408 C2H2 ZF 396 419
ENSCJAP00000051656 C2H2 ZF 255 278
ENSCJAP00000051656 C2H2 ZF 284 306
ENSCJAP00000051656 C2H2 ZF 312 334
ENSCJAP00000051656 C2H2 ZF 340 362
ENSCJAP00000051656 C2H2 ZF 368 390
ENSCJAP00000051656 C2H2 ZF 396 419

Links

Other C2H2 ZF family TFs
Other Callithrix jacchus TFs

137 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AUEXF2481DRAFT_1504 Aureobasidium subglaciale AUEXF2481DRAFT_1504 N
estExt_Genewise1Plus.C_sca_12_chr5_2_00225 Nectria haematococca estExt_Genewise1Plus.C_sca_12_chr5_2_00225 N
F503_04718 Ophiostoma piceae uamh F503_04718 N
FGRRES_10914 Fusarium graminearum FGRRES_10914 N
FOXG_12849 Fusarium oxysporum FOXG_12849 N
FPSE_01374 Fusarium pseudograminearum FPSE_01374 N
FVEG_11594 Fusarium verticillioides FVEG_11594 N
HMPREF1541_01855 Cyphellophora europaea HMPREF1541_01855 N
M437DRAFT_41932 Aureobasidium melanogenum M437DRAFT_41932 N
M438DRAFT_353945 Aureobasidium pullulans M438DRAFT_353945 N
NechaG68965 Fusarium solani NechaG68965 N
S40288_03578 Stachybotrys chartarum S40288_03578 N
VDAG_06923 Verticillium dahliae VDAG_06923 N
VDBG_05272 Verticillium albo atrum VDBG_05272 N
VDBG_05272 Verticillium alfalfae VDBG_05272 N