scrt2 (Danio rerio)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSDARG00000056175 T090955_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
scrt
M03673_2.00 		Drosophila melanogaster
RHGCAACAGGTGK
MCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
scrt_1 		0.792 0.841
scrt
M06085_2.00 		Drosophila melanogaster
MCCACCTGTTG
CAACAGGTGGK		 B1H
Zhu et al.(2011)
scrt_SANGER_2.5_FBgn0004880 		0.792 0.841
scrt
M06086_2.00 		Drosophila melanogaster
DNKCAACAGGTGK
MCACCTGTTGMNH		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_1_FBgn0004880 		0.792 0.841
scrt
M06087_2.00 		Drosophila melanogaster
VMCACCTGTTGMN
NKCAACAGGTGKB		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_2_FBgn0004880 		0.792 0.841
CG12605
M03691_2.00 		Drosophila melanogaster
RHGCAACAGGTGN
NCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
CG12605_1 		0.786 0.823
CG12605
M06139_2.00 		Drosophila melanogaster
CACCTGTKG
CMACAGGTG		 B1H
Zhu et al.(2011)
CG12605_SANGER_10_FBgn0035481 		0.786 0.823
CG12605
M06140_2.00 		Drosophila melanogaster
MCACCTGTKGVNN
NNBCMACAGGTGK		 B1H
Zhu et al.(2011)
CG12605_SOLEXA_5_FBgn0035481 		0.786 0.823
SCRT1
M02929_2.00 		Homo sapiens
RHKCAACAGGTGKNH
DNMCACCTGTTGMDY		 SELEX
Jolma et al.(2013)
SCRT1_1 		0.785 0.885
SCRT1
M04655_2.00 		Homo sapiens
NKCAACAGGTD
HACCTGTTGMN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_HT-SELEX 		0.785 0.885
SCRT1
M08397_2.00 		Homo sapiens
RWKCAACAGGTG
CACCTGTTGMWY		 ChIP-seq
Schmitges et al.(2016)
Q9BWW7_1-4.RCADE 		0.785 0.885
SCRT1
M04656_2.00 		Homo sapiens
NGCRACAGGTD
HACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_Methyl-HT-SELEX 		0.785 0.885
SCRT2
M02925_2.00 		Homo sapiens
RHGCAACAGGTGB
VCACCTGTTGCDY		 SELEX
Jolma et al.(2013)
SCRT2_1 		0.774 0.850
SCRT2
M04643_2.00 		Homo sapiens
NGCAACAGGTD
HACCTGTTGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_HT-SELEX 		0.774 0.850
SCRT2
M04644_2.00 		Homo sapiens
NGCRACAGGTG
CACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_Methyl-HT-SELEX 		0.774 0.850
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000053781 C2H2 ZF 162 184
ENSDARP00000053781 C2H2 ZF 194 215
ENSDARP00000053781 C2H2 ZF 219 241
ENSDARP00000053781 C2H2 ZF 247 269
ENSDARP00000053781 C2H2 ZF 275 296

Links

Other C2H2 ZF family TFs
Other Danio rerio TFs

193 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R001234 Calypte anna Aan_R001234 I
Afo_R013084 Aptenodytes forsteri Afo_R013084 I
Brh_R009865 Buceros rhinoceros Brh_R009865 I
Cmyd_10014359 Chelonia mydas Cmyd_10014359 I
ENSAPLG00000002762 Anas platyrhynchos ENSAPLG00000002762 I
ENSCSAG00000006941 Chlorocebus sabaeus ENSCSAG00000006941 I
ENSFALG00000006027 Ficedula albicollis ENSFALG00000006027 I
ENSMMUP00000039977 Macaca fascicularis ENSMMUP00000039977 I
ENSMPUG00000000272 Mustela putorius furo ENSMPUG00000000272 I
ENSORLG00000006797 Oryzias latipes ENSORLG00000006797 I
ENSP00000419153-D1 Bos grunniens ENSP00000419153-D1 I
ENSPANG00000015935 Papio anubis ENSPANG00000015935 I
ENSPPYG00000013526 Pongo abelii ENSPPYG00000013526 I
ENSSHAG00000009719 Sarcophilus harrisii ENSSHAG00000009719 I
ENSSSCG00000021456 Sus scrofa ENSSSCG00000021456 I
ENSSTOG00000001832 Ictidomys tridecemlineatus ENSSTOG00000001832 I
ENSTSYG00000009685 Tarsius syrichta ENSTSYG00000009685 I
Gfo_R000202 Geospiza fortis Gfo_R000202 I
Myotis_brandtii_ZBTB20_10031765 Myotis brandtii Myotis_brandtii_ZBTB20_10031765 I
Ogr18740 Ophisaurus gracilis Ogr18740 I
Pvit_00937 Pogona vitticeps Pvit_00937 I
XP_002939695 Xenopus tropicalis XP_002939695 I
ZBTB20 Tupaia belangeri ENSTBEG00000016630 I
ZBTB20 Anolis carolinensis ENSACAG00000009851 I
ZBTB20 Bos taurus ENSBTAG00000011928 I
ZBTB20 Canis familiaris ENSCAFG00000010823 I
ZBTB20 Callithrix jacchus ENSCJAG00000009211 I
ZBTB20 Cavia porcellus ENSCPOG00000021801 I
ZBTB20 Dasypus novemcinctus ENSDNOG00000042525 I
Zbtb20 Dipodomys ordii ENSDORG00000008535 I
ZBTB20 Equus caballus ENSECAG00000015809 I
ZBTB20 Erinaceus europaeus ENSEEUG00000005612 I
ZBTB20 Echinops telfairi ENSETEG00000013007 I
ZBTB20 Felis catus ENSFCAG00000022767 I
ZBTB20 Homo sapiens ENSG00000181722 D
zbtb20 Takifugu rubripes ENSTRUG00000016839 I
zbtb20 Tetraodon nigroviridis ENSTNIG00000010038 I
ZBTB20 Taeniopygia guttata ENSTGUG00000013404 I
ZBTB20 Monodelphis domestica ENSMODG00000018181 I
zbtb20 Gasterosteus aculeatus ENSGACG00000020693 I
ZBTB20 Sus scrofa ENSSSCG00000026113 I
ZBTB20 Gallus gallus ENSGALG00000015094 I
ZBTB20 Gorilla gorilla ENSGGOG00000025065 I
ZBTB20 Sorex araneus ENSSARG00000013404 I
Zbtb20 Rattus norvegicus ENSRNOG00000056716 I
ZBTB20 Pan troglodytes ENSPTRG00000015244 I
ZBTB20 Loxodonta africana ENSLAFG00000002752 I
ZBTB20 Meleagris gallopavo ENSMGAG00000014320 I
ZBTB20 Microcebus murinus ENSMICG00000008815 I
ZBTB20 Otolemur garnettii ENSOGAG00000029972 I
ZBTB20 Oryctolagus cuniculus ENSOCUG00000004232 I
Zbtb20 Mus musculus ENSMUSG00000022708 I
ZBTB20 Myotis lucifugus ENSMLUG00000014239 I