im:7142702 (Gasterosteus aculeatus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSGACG00000005537 T095592_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BCL11B
M04453_2.00 		Homo sapiens
GTGAACGBNDNNVCTACAC
GTGTAGBNNHNVCGTTCAC		 SELEX
Yin et al.(2017)
BCL11B_eDBD_HT-SELEX 		0.823 0.956
BCL11B
M04454_2.00 		Homo sapiens
GTGAACGBNDNHVCTACAC
GTGTAGBDNHNVCGTTCAC		 SELEX
Yin et al.(2017)
BCL11B_eDBD_Methyl-HT-SELEX 		0.823 0.956
BCL11A
M07926_2.00 		Homo sapiens
BTYTCASTTCCYYHH
DDRRGGAASTGARAV		 ChIP-seq
Gerstein et al.(2012)
GM12878_BCL11A_HudsonAlpha 		0.804 0.921
BCL11A
M08881_2.00 		Homo sapiens
BHBYCABTTCCYBHNYN
NRNDVRGGAAVTGRVDV		 Misc
Kulakovskiy et al.(2013)
BC11A_HUMAN.H11MO.0.A 		0.804 0.921
BCL11A
M10187_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL11A_02 		0.804 0.921
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000007319 C2H2 ZF 394 415
ENSGACP00000007319 C2H2 ZF 421 443
ENSGACP00000007319 C2H2 ZF 717 739
ENSGACP00000007319 C2H2 ZF 745 767
ENSGACP00000007319 C2H2 ZF 775 798

Links

Other C2H2 ZF family TFs
Other Gasterosteus aculeatus TFs

126 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT3G24860 Arabidopsis thaliana AT3G24860 N 0.000
Bostr.19424s0134 Boechera stricta Bostr.19424s0134 N 0.000
Bra015090 Brassica rapa Bra015090 N 0.000
Cagra.5961s0001 Capsella grandiflora Cagra.5961s0001 N 0.000
Carubv10014242m.g Capsella rubella Carubv10014242m.g N 0.000
fgenesh2_kg.3__2704__AT3G24860.1 Arabidopsis lyrata fgenesh2_kg.3__2704__AT3G24860.1 N 0.000
Thhalv10002843m.g Eutrema salsugineum Thhalv10002843m.g N 0.000