ENSLACG00000016839 (Latimeria chalumnae)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSLACG00000016839 T097155_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PATZ1
M08287_2.00 		Homo sapiens
CCCCDCCC
GGGHGGGG		 ChIP-seq
Schmitges et al.(2016)
Q9HBE1.MEME 		0.792 0.933
PATZ1
M08864_2.00 		Homo sapiens
NYBCHNBYBCMKYCYCYBCCMY
RKGGVRGRGRMKGVRVNDGVRN		 Misc
Kulakovskiy et al.(2013)
PATZ1_HUMAN.H11MO.0.C 		0.792 0.933
PATZ1
M10137_2.00 		Homo sapiens
NDDCCCCCCCCSH
DSGGGGGGGGHHN		 Transfac
Matys et al.(2006)
V$MAZR_01 		0.792 0.933
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLACP00000019138 C2H2 ZF 267 289
ENSLACP00000019138 C2H2 ZF 330 350
ENSLACP00000019138 C2H2 ZF 356 378
ENSLACP00000019138 C2H2 ZF 386 409
ENSLACP00000019138 C2H2 ZF 415 437
ENSLACP00000019138 C2H2 ZF 469 491

Links

Other C2H2 ZF family TFs
Other Latimeria chalumnae TFs

35 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo9g043530 Brassica oleracea Bo9g043530 I
Bostr.10040s0123 Boechera stricta Bostr.10040s0123 I
Bra040965 Brassica rapa Bra040965 I
Carubv10021738m.g Capsella rubella Carubv10021738m.g I