ZIC4 (Loxodonta africana)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSLAFG00000010922 T097338_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZIC4
M02912_2.00 		Homo sapiens
KRCCCCCYGYDGNGH
DCNCHRCRGGGGGYM		 SELEX
Jolma et al.(2013)
ZIC4_1 		0.781 0.991
ZIC4
M04566_2.00 		Homo sapiens
BVCMHCMYRYNRYGH
DCRYNRYRKGDKGBV		 SELEX
Yin et al.(2017)
ZIC4_eDBD_HT-SELEX 		0.781 0.991
ZIC4
M04567_2.00 		Homo sapiens
BRCCHCCYRYBGTKH
DMACVRYRGGDGGYV		 SELEX
Yin et al.(2017)
ZIC4_eDBD_Methyl-HT-SELEX 		0.781 0.991
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLAFP00000009135 C2H2 ZF 141 162
ENSLAFP00000009135 C2H2 ZF 171 198
ENSLAFP00000009135 C2H2 ZF 204 228
ENSLAFP00000009135 C2H2 ZF 234 258
ENSLAFP00000009135 C2H2 ZF 264 288
ENSLAFP00000027544 C2H2 ZF 24 44
ENSLAFP00000027544 C2H2 ZF 53 80
ENSLAFP00000027544 C2H2 ZF 86 110
ENSLAFP00000027544 C2H2 ZF 116 140
ENSLAFP00000027544 C2H2 ZF 146 170

Links

Other C2H2 ZF family TFs
Other Loxodonta africana TFs

54 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29005.m000265 Ricinus communis 29005.m000265 N
Ca_14339 Cicer arietinum Ca_14339 N
evm.TU.supercontig_29.114 Carica papaya evm.TU.supercontig_29.114 N
LjT29P04.60.nd Lotus japonicus LjT29P04.60.nd N
LjT39N06.120.nd Lotus japonicus LjT39N06.120.nd N
mgf023707m Mimulus guttatus mgf023707m N
MTR_5g078140 Medicago truncatula MTR_5g078140 I
Pavir.Fa00215 Panicum virgatum Pavir.Fa00215 N
SapurV1A.0531s0010 Salix purpurea SapurV1A.0531s0010 N
SELMODRAFT_39496 Selaginella moellendorffii SELMODRAFT_39496 N
SELMODRAFT_39499 Selaginella moellendorffii SELMODRAFT_39499 N
Si032487m.g Setaria italica Si032487m.g N
Traes_6DL_D1B5EA05F Triticum aestivum Traes_6DL_D1B5EA05F N