Prdm4 (Mus musculus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSMUSG00000035529 T101128_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PRDM4
M02881_2.00 		Homo sapiens
TTTCAAGGCCCCC
GGGGGCCTTGAAA		 SELEX
Jolma et al.(2013)
PRDM4_1 		0.827 1.000
PRDM4
M04421_2.00 		Homo sapiens
YRRCNGTTTCAAGKCYMCCC
GGGKRGMCTTGAAACNGYYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_HT-SELEX 		0.827 1.000
PRDM4
M04422_2.00 		Homo sapiens
YRGCRGTTTCRAGGSTTVCC
GGBAASCCTYGAAACYGCYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_1 		0.827 1.000
PRDM4
M04423_2.00 		Homo sapiens
YRRCRGTTTCRAGKSYNCCC
GGGNRSMCTYGAAACYGYYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_2 		0.827 1.000
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMUSP00000041942 C2H2 ZF 593 615
ENSMUSP00000041942 C2H2 ZF 621 643
ENSMUSP00000041942 C2H2 ZF 649 671
ENSMUSP00000041942 C2H2 ZF 677 699
ENSMUSP00000041942 C2H2 ZF 705 727
ENSMUSP00000041942 C2H2 ZF 733 754

Links

Other C2H2 ZF family TFs
Other Mus musculus TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28162.m000128 Ricinus communis 28162.m000128 N
Bo9g177030 Brassica oleracea Bo9g177030 N
Bra009123 Brassica rapa Bra009123 N
MDP0000239523 Malus domestica MDP0000239523 N
POPTR_0010s19600 Populus trichocarpa POPTR_0010s19600 N
SapurV1A.0061s0270 Salix purpurea SapurV1A.0061s0270 N
Si000223m.g Setaria italica Si000223m.g N