GFI1B (Ornithorhynchus anatinus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSOANG00000014723 T102427_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GFI1B
M00240_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_REF 		0.805 0.942
GFI1B
M04523_2.00 		Homo sapiens
NMAATCASDGCNNBBCACTNN
NNAGTGVVNNGCHSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_HT-SELEX 		0.805 0.942
GFI1B
M08909_2.00 		Homo sapiens
MAATCWSDGY
RCHSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_HUMAN.H11MO.0.A 		0.805 0.942
GFI1B
M10243_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_01 		0.805 0.942
GFI1B
M10244_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_Q6 		0.805 0.942
GFI1B
M04524_2.00 		Homo sapiens
NMAATCASWGCDNNBCACTHN
NDAGTGVNNHGCWSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_Methyl-HT-SELEX 		0.805 0.942
Gfi1b
M08098_2.00 		Mus musculus
MAATCWCWGCH
DGCWGWGATTK		 ChIP-seq
Mathelier et al.(2014)
MA0483.1 		0.803 0.935
Gfi1b
M08977_2.00 		Mus musculus
MAAYCACWGH
DCWGWGRTTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_MOUSE.H11MO.0.A 		0.803 0.935
Gfi1b
M09514_2.00 		Mus musculus
MAATCWSWGC
GCWSWGATTK		 Misc
Heinz et al.(2010)
HPC7-Gfi1b_GSE22178 		0.803 0.935
GFI1B
M00239_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_A204T 		0.796 0.935
GFI1
M00238_2.00 		Homo sapiens
NWAWMNNNN
NNNNKWTWN		 PBM
Barrera et al.(2016)
GFI1_REF 		0.776 0.891
GFI1
M04507_2.00 		Homo sapiens
BMAATCACDGCNHBBCACTMN
NKAGTGVVDNGCHGTGATTKV		 SELEX
Yin et al.(2017)
GFI1_eDBD_HT-SELEX 		0.776 0.891
Gfi1
M02668_2.00 		Rattus norvegicus
NMAATCWVHS
SDBWGATTKN		 SELEX
Mathelier et al.(2014)
MA0038.1 		0.776 0.891
GFI1
M08905_2.00 		Homo sapiens
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_HUMAN.H11MO.0.C 		0.776 0.891
Gfi1
M08984_2.00 		Mus musculus
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_MOUSE.H11MO.0.C 		0.776 0.891
GFI1
M10235_2.00 		Homo sapiens
NNNNNNNRCHSWGATTTDNNBNNN
NNNVNNHAAATCWSDGYNNNNNNN		 Transfac
Matys et al.(2006)
V$GFI1_01 		0.776 0.891
GFI1
M10236_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1_Q6_01 		0.776 0.891
GFI1
M04508_2.00 		Homo sapiens
NNAGTGVVNHGCWSTGATTKV
BMAATCASWGCDNBBCACTNN		 SELEX
Yin et al.(2017)
GFI1_eDBD_Methyl-HT-SELEX 		0.776 0.891
sens-2
M06165_2.00 		Drosophila melanogaster
RYAAATCWSDGCAYNC
GNRTGCHSWGATTTRY		 B1H
Zhu et al.(2011)
sens-2_SANGER_2.5_FBgn0051632 		0.775 0.841
GFI1
M00236_2.00 		Homo sapiens
NAATMNNNN
NNNNKATTN		 PBM
Barrera et al.(2016)
GFI1_L400F 		0.774 0.884
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSOANP00000023198 C2H2 ZF 154 177
ENSOANP00000023198 C2H2 ZF 183 205
ENSOANP00000023198 C2H2 ZF 211 233
ENSOANP00000023198 C2H2 ZF 239 261
ENSOANP00000023198 C2H2 ZF 267 289
ENSOANP00000023198 C2H2 ZF 295 318

Links

Other C2H2 ZF family TFs
Other Ornithorhynchus anatinus TFs

138 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R000889 Calypte anna Aan_R000889 I 0.776
Aan_R008865 Calypte anna Aan_R008865 I 0.809
Afo_R001655 Aptenodytes forsteri Afo_R001655 I 0.809
Afo_R006147 Aptenodytes forsteri Afo_R006147 I 0.776
Alligator_sinensis_CCG007476.1 Alligator sinensis Alligator_sinensis_CCG007476.1 I 0.776
Brh_R002465 Buceros rhinoceros Brh_R002465 I 0.776
CGI_10011355 Crassostrea gigas CGI_10011355 I 0.775
CGI_10017941 Crassostrea gigas CGI_10017941 I 0.761
Cmyd_10004881 Chelonia mydas Cmyd_10004881 I 0.778
Cmyd_10017172 Chelonia mydas Cmyd_10017172 I 0.807
D918_06477 Trichuris suis D918_06477 I 0.757
ENSAMEG00000013858 Ailuropoda melanoleuca ENSAMEG00000013858 I 0.776
ENSAMXG00000004835 Astyanax mexicanus ENSAMXG00000004835 I 0.781
ENSAPLG00000003373 Anas platyrhynchos ENSAPLG00000003373 I 0.809
ENSAPLG00000015700 Anas platyrhynchos ENSAPLG00000015700 I 0.776
ENSBTAP00000016974-D1 Bos grunniens ENSBTAP00000016974-D1 I 0.794
ENSBTAP00000022231-D1 Bos grunniens ENSBTAP00000022231-D1 I 0.772
ENSCSAG00000015008 Chlorocebus sabaeus ENSCSAG00000015008 I 0.803
ENSFALG00000001479 Ficedula albicollis ENSFALG00000001479 I 0.809
ENSGALG00000005940 Gallus gallus ENSGALG00000005940 I 0.776
ENSGMOG00000007737 Gadus morhua ENSGMOG00000007737 I 0.776
ENSGMOG00000017295 Gadus morhua ENSGMOG00000017295 I 0.760
ENSGMOG00000019123 Gadus morhua ENSGMOG00000019123 I 0.784
ENSLACG00000012207 Latimeria chalumnae ENSLACG00000012207 I 0.809
ENSLACG00000013362 Latimeria chalumnae ENSLACG00000013362 I 0.778
ENSLOCG00000004711 Lepisosteus oculatus ENSLOCG00000004711 I 0.774
ENSLOCG00000005750 Lepisosteus oculatus ENSLOCG00000005750 I 0.786
ENSMMUG00000005068 Macaca mulatta ENSMMUG00000005068 I 0.776
ENSMPUG00000004178 Mustela putorius furo ENSMPUG00000004178 I 0.776
ENSMPUG00000012489 Mustela putorius furo ENSMPUG00000012489 I 0.805
ENSNLEG00000010470 Nomascus leucogenys ENSNLEG00000010470 I 0.776
ENSNLEG00000012963 Nomascus leucogenys ENSNLEG00000012963 I 0.805
ENSONIG00000010573 Oreochromis niloticus ENSONIG00000010573 I 0.764
ENSONIG00000013011 Oreochromis niloticus ENSONIG00000013011 I 0.794
ENSONIG00000019246 Oreochromis niloticus ENSONIG00000019246 I 0.776
ENSP00000361195 Macaca fascicularis ENSP00000361195 I 0.803
ENSP00000399719 Macaca fascicularis ENSP00000399719 I 0.770
ENSPANG00000016433 Papio anubis ENSPANG00000016433 I 0.776
ENSPANG00000024216 Papio anubis ENSPANG00000024216 I 0.803
ENSPFOG00000003460 Poecilia formosa ENSPFOG00000003460 I 0.786
ENSPFOG00000017327 Poecilia formosa ENSPFOG00000017327 I 0.764
ENSPFOG00000023214 Poecilia formosa ENSPFOG00000023214 I 0.778
ENSPPYG00000019718 Pongo abelii ENSPPYG00000019718 I 0.805
ENSPSIG00000008734 Pelodiscus sinensis ENSPSIG00000008734 I 0.776
ENSPSIG00000012112 Pelodiscus sinensis ENSPSIG00000012112 I 0.804
ENSSTOG00000014583 Ictidomys tridecemlineatus ENSSTOG00000014583 I 0.776
ENSSTOG00000022285 Ictidomys tridecemlineatus ENSSTOG00000022285 I 0.807
ENSXMAG00000009274 Xiphophorus maculatus ENSXMAG00000009274 I 0.764
e_gw.11.853.1 Branchiostoma floridae e_gw.11.853.1 I 0.764
GA16348 Drosophila pseudoobscura FBgn0076363 I 0.775
GE14143 Drosophila yakuba FBgn0231766 I 0.775
GF15430 Drosophila ananassae FBgn0092455 I 0.775
GFI1 Anolis carolinensis ENSACAG00000004498 I 0.774
GFI1 Bos taurus ENSBTAG00000016723 I 0.778
GFI1 Canis familiaris ENSCAFG00000020155 I 0.776
GFI1 Callithrix jacchus ENSCJAG00000017609 I 0.776
GFI1 Cavia porcellus ENSCPOG00000011727 I 0.773
GFI1 Dasypus novemcinctus ENSDNOG00000000782 I 0.776
GFI1 Equus caballus ENSECAG00000006647 I 0.778
GFI1 Erinaceus europaeus ENSEEUG00000000198 I 0.776
GFI1 Felis catus ENSFCAG00000005914 I 0.776
GFI1 Homo sapiens ENSG00000162676 D 0.776
GFI1 Gorilla gorilla ENSGGOG00000005320 I 0.776
GFI1 Loxodonta africana ENSLAFG00000018346 I 0.776
GFI1 Meleagris gallopavo ENSMGAG00000008187 I 0.776
GFI1 Myotis lucifugus ENSMLUG00000015191 I 0.778
GFI1 Monodelphis domestica ENSMODG00000011802 I 0.776
Gfi1 Mus musculus ENSMUSG00000029275 D 0.776
GFI1 Otolemur garnettii ENSOGAG00000027913 I 0.776
GFI1 Ochotona princeps ENSOPRG00000001473 I 0.776
GFI1 Pteropus vampyrus ENSPVAG00000006928 I 0.778
Gfi1 Rattus norvegicus ENSRNOG00000002042 D 0.776
GFI1 Sus scrofa ENSSSCG00000006902 I 0.778
GFI1 Taeniopygia guttata ENSTGUG00000006060 I 0.776
GFI1 Tursiops truncatus ENSTTRG00000000082 I 0.778
gfi1 Xenopus tropicalis XB-GENE-960553 I 0.774
gfi1aa Danio rerio ENSDARG00000020746 I 0.778
gfi1aa Gasterosteus aculeatus ENSGACG00000015674 I 0.770
gfi1aa Oryzias latipes ENSORLG00000005060 I 0.764
gfi1aa Takifugu rubripes ENSTRUG00000004744 I 0.760
gfi1ab Danio rerio ENSDARG00000044457 I 0.780
gfi1ab Gasterosteus aculeatus ENSGACG00000004257 I 0.768
gfi1ab Tetraodon nigroviridis ENSTNIG00000000651 I 0.776
gfi1ab Takifugu rubripes ENSTRUG00000000415 I 0.776
GFI1B Bos taurus ENSBTAG00000012772 I 0.794
GFI1B Canis familiaris ENSCAFG00000019877 I 0.805
GFI1B Callithrix jacchus ENSCJAG00000018071 I 0.805
GFI1B Cavia porcellus ENSCPOG00000026928 I 0.794
gfi1b Danio rerio ENSDARG00000079947 I 0.786
GFI1B Dasypus novemcinctus ENSDNOG00000036528 I 0.805
Gfi1b Dipodomys ordii ENSDORG00000000342 I 0.795
GFI1B Equus caballus ENSECAG00000008127 I 0.803
GFI1B Felis catus ENSFCAG00000027147 I 0.807
GFI1B Homo sapiens ENSG00000165702 D 0.805
gfi1b Gasterosteus aculeatus ENSGACG00000018134 I 0.784
GFI1B Gallus gallus ENSGALG00000003478 I 0.809
GFI1B Gorilla gorilla ENSGGOG00000015828 I 0.805
GFI1B Loxodonta africana ENSLAFG00000022367 I 0.799
GFI1B Meleagris gallopavo ENSMGAG00000006129 I 0.809
GFI1B Myotis lucifugus ENSMLUG00000006673 I 0.797
GFI1B Macaca mulatta ENSMMUG00000005948 I 0.794
GFI1B Monodelphis domestica ENSMODG00000012600 I 0.811
Gfi1b Mus musculus ENSMUSG00000026815 D 0.803
GFI1B Oryctolagus cuniculus ENSOCUG00000001793 I 0.805
GFI1B Otolemur garnettii ENSOGAG00000008879 I 0.799
gfi1b Oryzias latipes ENSORLG00000014390 I 0.792
GFI1B Procavia capensis ENSPCAG00000012329 I 0.797
GFI1B Pan troglodytes ENSPTRG00000021505 I 0.805
Gfi1b Rattus norvegicus ENSRNOG00000011353 I 0.805
GFI1B Sus scrofa ENSSSCG00000005737 I 0.807
gfi1b Tetraodon nigroviridis ENSTNIG00000003834 I 0.792
gfi1b Takifugu rubripes ENSTRUG00000004525 I 0.792
gfi1b Xenopus tropicalis XB-GENE-944426 I 0.802
gfi1b.L Xenopus laevis XB-GENE-944429 I 0.802
Gfo_R007994 Geospiza fortis Gfo_R007994 I 0.809
Gfo_R010648 Geospiza fortis Gfo_R010648 I 0.776
GG10437 Drosophila erecta FBgn0102746 I 0.775
GH13715 Drosophila grimshawi FBgn0121191 I 0.775
GI23984 Drosophila mojavensis FBgn0146708 I 0.775
GJ21268 Drosophila virilis FBgn0208401 I 0.775
GK24242 Drosophila willistoni FBgn0226203 I 0.775
GL26188 Drosophila persimilis FBgn0163770 I 0.775
GM16223 Drosophila sechellia FBgn0171139 I 0.775
LotgiG129344 Lottia gigantea LotgiG129344 I 0.763
LotgiG83709 Lottia gigantea LotgiG83709 I 0.763
MDOA011065 Musca domestica MDOA011065 I 0.775
Myotis_brandtii_GFI1B_10010118 Myotis brandtii Myotis_brandtii_GFI1B_10010118 I 0.785
NEMVEDRAFT_v1g182742 Nematostella vectensis NEMVEDRAFT_v1g182742 I 0.766
Ogr09401 Ophisaurus gracilis Ogr09401 I 0.774
Pvit_00259 Pogona vitticeps Pvit_00259 I 0.771
Sakowv30015313m.g Saccoglossus kowalevskii Sakowv30015313m.g I 0.764
sens-2 Drosophila melanogaster FBgn0051632 D 0.775
SPU_012645 Strongylocentrotus purpuratus SPU_012645 I 0.777
Tal_R001363 Tyto alba Tal_R001363 I 0.809
Tal_R006464 Tyto alba Tal_R006464 I 0.776
tetur16g01570 Tetranychus urticae tetur16g01570 I 0.765
TMUE_s0128002800 Trichuris muris TMUE_s0128002800 I 0.758
TTRE_0000385401 Trichuris trichiura TTRE_0000385401 I 0.757