gfi1b (Oryzias latipes)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSORLG00000014390 T104923_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GFI1B
M00240_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_REF 		0.787 0.884
GFI1B
M04523_2.00 		Homo sapiens
NMAATCASDGCNNBBCACTNN
NNAGTGVVNNGCHSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_HT-SELEX 		0.787 0.884
GFI1B
M08909_2.00 		Homo sapiens
MAATCWSDGY
RCHSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_HUMAN.H11MO.0.A 		0.787 0.884
GFI1B
M10243_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_01 		0.787 0.884
GFI1B
M10244_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_Q6 		0.787 0.884
GFI1B
M04524_2.00 		Homo sapiens
NMAATCASWGCDNNBCACTHN
NDAGTGVNNHGCWSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_Methyl-HT-SELEX 		0.787 0.884
Gfi1b
M08098_2.00 		Mus musculus
MAATCWCWGCH
DGCWGWGATTK		 ChIP-seq
Mathelier et al.(2014)
MA0483.1 		0.785 0.877
Gfi1b
M08977_2.00 		Mus musculus
MAAYCACWGH
DCWGWGRTTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_MOUSE.H11MO.0.A 		0.785 0.877
Gfi1b
M09514_2.00 		Mus musculus
MAATCWSWGC
GCWSWGATTK		 Misc
Heinz et al.(2010)
HPC7-Gfi1b_GSE22178 		0.785 0.877
GFI1B
M00239_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_A204T 		0.777 0.877
GFI1
M00238_2.00 		Homo sapiens
NWAWMNNNN
NNNNKWTWN		 PBM
Barrera et al.(2016)
GFI1_REF 		0.772 0.870
GFI1
M04507_2.00 		Homo sapiens
BMAATCACDGCNHBBCACTMN
NKAGTGVVDNGCHGTGATTKV		 SELEX
Yin et al.(2017)
GFI1_eDBD_HT-SELEX 		0.772 0.870
Gfi1
M02668_2.00 		Rattus norvegicus
NMAATCWVHS
SDBWGATTKN		 SELEX
Mathelier et al.(2014)
MA0038.1 		0.772 0.870
GFI1
M08905_2.00 		Homo sapiens
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_HUMAN.H11MO.0.C 		0.772 0.870
Gfi1
M08984_2.00 		Mus musculus
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_MOUSE.H11MO.0.C 		0.772 0.870
GFI1
M10235_2.00 		Homo sapiens
NNNNNNNRCHSWGATTTDNNBNNN
NNNVNNHAAATCWSDGYNNNNNNN		 Transfac
Matys et al.(2006)
V$GFI1_01 		0.772 0.870
GFI1
M10236_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1_Q6_01 		0.772 0.870
GFI1
M00236_2.00 		Homo sapiens
NAATMNNNN
NNNNKATTN		 PBM
Barrera et al.(2016)
GFI1_L400F 		0.772 0.870
GFI1
M04508_2.00 		Homo sapiens
NNAGTGVVNHGCWSTGATTKV
BMAATCASWGCDNBBCACTNN		 SELEX
Yin et al.(2017)
GFI1_eDBD_Methyl-HT-SELEX 		0.772 0.870
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000018038 C2H2 ZF 171 194
ENSORLP00000018038 C2H2 ZF 200 222
ENSORLP00000018038 C2H2 ZF 228 250
ENSORLP00000018038 C2H2 ZF 256 278
ENSORLP00000018038 C2H2 ZF 284 306
ENSORLP00000018038 C2H2 ZF 312 335

Links

Other C2H2 ZF family TFs
Other Oryzias latipes TFs

116 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R000889 Calypte anna Aan_R000889 I 0.770
Aan_R008865 Calypte anna Aan_R008865 I 0.782
Afo_R001655 Aptenodytes forsteri Afo_R001655 I 0.782
Afo_R006147 Aptenodytes forsteri Afo_R006147 I 0.770
Alligator_sinensis_CCG007476.1 Alligator sinensis Alligator_sinensis_CCG007476.1 I 0.770
Brh_R002465 Buceros rhinoceros Brh_R002465 I 0.770
CGI_10011355 Crassostrea gigas CGI_10011355 I 0.761
Cmyd_10004881 Chelonia mydas Cmyd_10004881 I 0.772
Cmyd_10017172 Chelonia mydas Cmyd_10017172 I 0.785
ENSAMEG00000013858 Ailuropoda melanoleuca ENSAMEG00000013858 I 0.772
ENSAMXG00000004835 Astyanax mexicanus ENSAMXG00000004835 I 0.764
ENSAPLG00000003373 Anas platyrhynchos ENSAPLG00000003373 I 0.782
ENSAPLG00000015700 Anas platyrhynchos ENSAPLG00000015700 I 0.770
ENSBTAP00000016974-D1 Bos grunniens ENSBTAP00000016974-D1 I 0.777
ENSBTAP00000022231-D1 Bos grunniens ENSBTAP00000022231-D1 I 0.770
ENSCSAG00000015008 Chlorocebus sabaeus ENSCSAG00000015008 I 0.785
ENSFALG00000001479 Ficedula albicollis ENSFALG00000001479 I 0.782
ENSGALG00000005940 Gallus gallus ENSGALG00000005940 I 0.770
ENSGMOG00000007737 Gadus morhua ENSGMOG00000007737 I 0.770
ENSGMOG00000017295 Gadus morhua ENSGMOG00000017295 I 0.765
ENSGMOG00000019123 Gadus morhua ENSGMOG00000019123 I 0.810
ENSLACG00000012207 Latimeria chalumnae ENSLACG00000012207 I 0.790
ENSLACG00000013362 Latimeria chalumnae ENSLACG00000013362 I 0.774
ENSLOCG00000004711 Lepisosteus oculatus ENSLOCG00000004711 I 0.774
ENSLOCG00000005750 Lepisosteus oculatus ENSLOCG00000005750 I 0.812
ENSMMUG00000005068 Macaca mulatta ENSMMUG00000005068 I 0.772
ENSMPUG00000004178 Mustela putorius furo ENSMPUG00000004178 I 0.772
ENSMPUG00000012489 Mustela putorius furo ENSMPUG00000012489 I 0.787
ENSNLEG00000010470 Nomascus leucogenys ENSNLEG00000010470 I 0.772
ENSNLEG00000012963 Nomascus leucogenys ENSNLEG00000012963 I 0.787
ENSONIG00000010573 Oreochromis niloticus ENSONIG00000010573 I 0.767
ENSONIG00000013011 Oreochromis niloticus ENSONIG00000013011 I 0.825
ENSONIG00000019246 Oreochromis niloticus ENSONIG00000019246 I 0.772
ENSP00000361195 Macaca fascicularis ENSP00000361195 I 0.785
ENSP00000399719 Macaca fascicularis ENSP00000399719 I 0.768
ENSPANG00000016433 Papio anubis ENSPANG00000016433 I 0.772
ENSPANG00000024216 Papio anubis ENSPANG00000024216 I 0.785
ENSPFOG00000003460 Poecilia formosa ENSPFOG00000003460 I 0.815
ENSPFOG00000017327 Poecilia formosa ENSPFOG00000017327 I 0.767
ENSPFOG00000023214 Poecilia formosa ENSPFOG00000023214 I 0.772
ENSPPYG00000019718 Pongo abelii ENSPPYG00000019718 I 0.787
ENSPSIG00000008734 Pelodiscus sinensis ENSPSIG00000008734 I 0.770
ENSPSIG00000012112 Pelodiscus sinensis ENSPSIG00000012112 I 0.788
ENSSTOG00000014583 Ictidomys tridecemlineatus ENSSTOG00000014583 I 0.772
ENSSTOG00000022285 Ictidomys tridecemlineatus ENSSTOG00000022285 I 0.782
ENSXMAG00000009274 Xiphophorus maculatus ENSXMAG00000009274 I 0.767
GFI1 Anolis carolinensis ENSACAG00000004498 I 0.770
GFI1 Bos taurus ENSBTAG00000016723 I 0.774
GFI1 Canis familiaris ENSCAFG00000020155 I 0.772
GFI1 Callithrix jacchus ENSCJAG00000017609 I 0.772
GFI1 Cavia porcellus ENSCPOG00000011727 I 0.772
GFI1 Dasypus novemcinctus ENSDNOG00000000782 I 0.772
GFI1 Equus caballus ENSECAG00000006647 I 0.774
GFI1 Erinaceus europaeus ENSEEUG00000000198 I 0.772
GFI1 Felis catus ENSFCAG00000005914 I 0.772
GFI1 Homo sapiens ENSG00000162676 D 0.772
GFI1 Gorilla gorilla ENSGGOG00000005320 I 0.772
GFI1 Loxodonta africana ENSLAFG00000018346 I 0.772
GFI1 Meleagris gallopavo ENSMGAG00000008187 I 0.770
GFI1 Myotis lucifugus ENSMLUG00000015191 I 0.774
GFI1 Monodelphis domestica ENSMODG00000011802 I 0.772
Gfi1 Mus musculus ENSMUSG00000029275 D 0.772
GFI1 Otolemur garnettii ENSOGAG00000027913 I 0.772
GFI1 Ochotona princeps ENSOPRG00000001473 I 0.772
GFI1 Pteropus vampyrus ENSPVAG00000006928 I 0.774
Gfi1 Rattus norvegicus ENSRNOG00000002042 D 0.772
GFI1 Sus scrofa ENSSSCG00000006902 I 0.774
GFI1 Taeniopygia guttata ENSTGUG00000006060 I 0.770
GFI1 Tursiops truncatus ENSTTRG00000000082 I 0.774
gfi1 Xenopus tropicalis XB-GENE-960553 I 0.770
gfi1aa Danio rerio ENSDARG00000020746 I 0.774
gfi1aa Gasterosteus aculeatus ENSGACG00000015674 I 0.774
gfi1aa Oryzias latipes ENSORLG00000005060 I 0.767
gfi1aa Takifugu rubripes ENSTRUG00000004744 I 0.763
gfi1ab Danio rerio ENSDARG00000044457 I 0.774
gfi1ab Gasterosteus aculeatus ENSGACG00000004257 I 0.756
gfi1ab Tetraodon nigroviridis ENSTNIG00000000651 I 0.762
gfi1ab Takifugu rubripes ENSTRUG00000000415 I 0.764
GFI1B Bos taurus ENSBTAG00000012772 I 0.777
GFI1B Canis familiaris ENSCAFG00000019877 I 0.787
GFI1B Callithrix jacchus ENSCJAG00000018071 I 0.787
GFI1B Cavia porcellus ENSCPOG00000026928 I 0.787
gfi1b Danio rerio ENSDARG00000079947 I 0.806
GFI1B Dasypus novemcinctus ENSDNOG00000036528 I 0.787
Gfi1b Dipodomys ordii ENSDORG00000000342 I 0.777
GFI1B Equus caballus ENSECAG00000008127 I 0.785
GFI1B Felis catus ENSFCAG00000027147 I 0.789
GFI1B Homo sapiens ENSG00000165702 D 0.787
gfi1b Gasterosteus aculeatus ENSGACG00000018134 I 0.815
GFI1B Gallus gallus ENSGALG00000003478 I 0.782
GFI1B Gorilla gorilla ENSGGOG00000015828 I 0.787
GFI1B Loxodonta africana ENSLAFG00000022367 I 0.782
GFI1B Meleagris gallopavo ENSMGAG00000006129 I 0.782
GFI1B Myotis lucifugus ENSMLUG00000006673 I 0.772
GFI1B Macaca mulatta ENSMMUG00000005948 I 0.775
GFI1B Monodelphis domestica ENSMODG00000012600 I 0.784
Gfi1b Mus musculus ENSMUSG00000026815 D 0.785
GFI1B Ornithorhynchus anatinus ENSOANG00000014723 I 0.792
GFI1B Oryctolagus cuniculus ENSOCUG00000001793 I 0.787
GFI1B Otolemur garnettii ENSOGAG00000008879 I 0.781
GFI1B Procavia capensis ENSPCAG00000012329 I 0.787
GFI1B Pan troglodytes ENSPTRG00000021505 I 0.787
Gfi1b Rattus norvegicus ENSRNOG00000011353 I 0.787
GFI1B Sus scrofa ENSSSCG00000005737 I 0.789
gfi1b Tetraodon nigroviridis ENSTNIG00000003834 I 0.823
gfi1b Takifugu rubripes ENSTRUG00000004525 I 0.823
gfi1b Xenopus tropicalis XB-GENE-944426 I 0.801
gfi1b.L Xenopus laevis XB-GENE-944429 I 0.801
Gfo_R007994 Geospiza fortis Gfo_R007994 I 0.782
Gfo_R010648 Geospiza fortis Gfo_R010648 I 0.770
Myotis_brandtii_GFI1B_10010118 Myotis brandtii Myotis_brandtii_GFI1B_10010118 I 0.762
Ogr09401 Ophisaurus gracilis Ogr09401 I 0.770
Pvit_00259 Pogona vitticeps Pvit_00259 I 0.770
SPU_012645 Strongylocentrotus purpuratus SPU_012645 I 0.775
Tal_R001363 Tyto alba Tal_R001363 I 0.783
Tal_R006464 Tyto alba Tal_R006464 I 0.770