ENSPSIG00000011787 (Pelodiscus sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSPSIG00000011787 T107657_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Osr2
M00132_2.00 		Mus musculus
NGCTWCYGNN
NNCRGWAGCN		 PBM
Badis et al.(2009)
Osr2_1727 		0.827 1.000
Osr1
M00144_2.00 		Mus musculus
NVCTHCYNN
NNRGDAGBN		 PBM
Badis et al.(2009)
Osr1_3033 		0.811 0.986
Osr1
M01174_2.00 		Mus musculus
GCTACYGT
ACRGTAGC		 PBM
Lambert et al.(2019)
pTH5339 		0.811 0.986
OSR1
M04477_2.00 		Homo sapiens
NGCTACYGTD
HACRGTAGCN		 SELEX
Yin et al.(2017)
OSR1_eDBD_HT-SELEX 		0.811 0.986
OSR1
M04478_2.00 		Homo sapiens
NGCTACYGTD
HACRGTAGCN		 SELEX
Yin et al.(2017)
OSR1_eDBD_Methyl-HT-SELEX 		0.811 0.986
odd-2
M00618_2.00 		Caenorhabditis elegans
NGCTACYGK
MCRGTAGCN		 PBM
Narasimhan et al.(2015)
pTH9150 		0.770 0.826
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPSIP00000013093 C2H2 ZF 172 194
ENSPSIP00000013093 C2H2 ZF 200 222
ENSPSIP00000013093 C2H2 ZF 228 250

Links

Other C2H2 ZF family TFs
Other Pelodiscus sinensis TFs

135 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AC233853.1_FG002 Zea mays AC233853.1_FG002 N 0.000
Aquca_051_00100 Aquilegia coerulea Aquca_051_00100 N 0.000
Aquca_058_00063 Aquilegia coerulea Aquca_058_00063 I 0.000
AT4G38900 Arabidopsis thaliana AT4G38900 I 0.000
BGIOSGA007886 Oryza indica BGIOSGA007886 N 0.000
Bo3g149620 Brassica oleracea Bo3g149620 I 0.000
Bo7g119550 Brassica oleracea Bo7g119550 I 0.000
Bostr.25542s0069 Boechera stricta Bostr.25542s0069 I 0.000
Bra010722 Brassica rapa Bra010722 I 0.000
Bra033582 Brassica rapa Bra033582 I 0.000
BRADI2G06790 Brachypodium distachyon BRADI2G06790 N 0.000
BRADI5G14497 Brachypodium distachyon BRADI5G14497 I 0.000
BZIP02 Oryza sativa OS01G0211800 N 0.000
cassava30160.valid.m1 Manihot esculenta cassava30160.valid.m1 I 0.000
cassava38273.valid.m1 Manihot esculenta cassava38273.valid.m1 I 0.000
Ca_27693 Cicer arietinum Ca_27693 I 0.000
Ciclev10028062m.g Citrus clementina Ciclev10028062m.g I 0.000
Cla016124 Citrullus lanatus Cla016124 I 0.000
Cla016125 Citrullus lanatus Cla016125 I 0.000
Cucsa.382180 Cucumis sativus Cucsa.382180 I 0.000
Cucsa.382190 Cucumis sativus Cucsa.382190 I 0.000
estExt_fgenesh1_pg.C_160081 Physcomitrella patens estExt_fgenesh1_pg.C_160081 N 0.000
estExt_fgenesh1_pg.C_2820001 Physcomitrella patens estExt_fgenesh1_pg.C_2820001 N 0.000
estExt_gwp_gw1.C_5120003 Physcomitrella patens estExt_gwp_gw1.C_5120003 I 0.000
Eucgr.H00344 Eucalyptus grandis Eucgr.H00344 N 0.000
Eucgr.I01335 Eucalyptus grandis Eucgr.I01335 I 0.000
evm.TU.supercontig_150.7 Carica papaya evm.TU.supercontig_150.7 I 0.000
fgenesh1_pg.scaffold_3000202 Physcomitrella patens fgenesh1_pg.scaffold_3000202 N 0.000
GLYMA11G11791 Glycine max GLYMA11G11791 I 0.000
GLYMA12G04050 Glycine max GLYMA12G04050 I 0.000
Gorai.001G243800 Gossypium raimondii Gorai.001G243800 I 0.000
Gorai.005G248900 Gossypium raimondii Gorai.005G248900 I 0.000
GSMUA_Achr11G14990_001 Musa acuminata GSMUA_Achr11G14990_001 I 0.000
GSMUA_Achr3G12290_001 Musa acuminata GSMUA_Achr3G12290_001 I 0.000
GSMUA_Achr5G25700_001 Musa acuminata GSMUA_Achr5G25700_001 I 0.000
GSMUA_Achr6G26930_001 Musa acuminata GSMUA_Achr6G26930_001 N 0.000
GSMUA_Achr9G06540_001 Musa acuminata GSMUA_Achr9G06540_001 N 0.000
GSMUA_AchrUn_randomG00680_001 Musa acuminata GSMUA_AchrUn_randomG00680_001 I 0.000
gw1.20.225.1 Physcomitrella patens gw1.20.225.1 I 0.000
LPERR01G06720 Leersia perrieri LPERR01G06720 N 0.000
Lus10018061.g Linum usitatissimum Lus10018061.g I 0.000
Lus10042057.g Linum usitatissimum Lus10042057.g I 0.000
mgf000302m Mimulus guttatus mgf000302m I 0.000
mgf004912m Mimulus guttatus mgf004912m I 0.000
MLOC_64362 Hordeum vulgare MLOC_64362 I 0.000
MLOC_72368 Hordeum vulgare MLOC_72368 N 0.000
MTR_4g072090 Medicago truncatula MTR_4g072090 I 0.000
OB01G17130 Oryza brachyantha OB01G17130 N 0.000
OBART01G07120 Oryza barthii OBART01G07120 N 0.000
OBART02G10550 Oryza barthii OBART02G10550 N 0.000
OGLUM01G08020 Oryza glumaepatula OGLUM01G08020 N 0.000
OGLUM02G10470 Oryza glumaepatula OGLUM02G10470 N 0.000
OLONG_003093 Oryza longistaminata OLONG_003093 N 0.000
OMERI02G11410 Oryza meridionalis OMERI02G11410 N 0.000
ONIVA01G09160 Oryza nivara ONIVA01G09160 N 0.000
ONIVA02G11660 Oryza nivara ONIVA02G11660 N 0.000
OPUNC01G06850 Oryza punctata OPUNC01G06850 N 0.000
OPUNC01G30390 Oryza punctata OPUNC01G30390 N 0.000
OPUNC02G09400 Oryza punctata OPUNC02G09400 N 0.000
orange1.1g007579m.g Citrus sinensis orange1.1g007579m.g I 0.000
ORGLA02G0094900 Oryza glaberrima ORGLA02G0094900 N 0.000
ORUFI01G07680 Oryza rufipogon ORUFI01G07680 N 0.000
ORUFI02G10470 Oryza rufipogon ORUFI02G10470 N 0.000
Pavir.Eb03400 Panicum virgatum Pavir.Eb03400 N 0.000
Pavir.J05339 Panicum virgatum Pavir.J05339 N 0.000
Pavir.J11397 Panicum virgatum Pavir.J11397 N 0.000
PGSC0003DMG400001659 Solanum tuberosum PGSC0003DMG400001659 I 0.000
PK00843.1 Cannabis sativa PK00843.1 I 0.000
POPTR_0004s17080 Populus trichocarpa POPTR_0004s17080 I 0.000
POPTR_0009s12830 Populus trichocarpa POPTR_0009s12830 I 0.000
SapurV1A.0091s0130 Salix purpurea SapurV1A.0091s0130 I 0.000
SapurV1A.0379s0290 Salix purpurea SapurV1A.0379s0290 I 0.000
Sb03g002050 Sorghum bicolor Sb03g002050 N 0.000
Sb06g021350 Sorghum bicolor Sb06g021350 I 0.000
SELMODRAFT_129846 Selaginella moellendorffii SELMODRAFT_129846 I 0.000
SELMODRAFT_34663 Selaginella moellendorffii SELMODRAFT_34663 I 0.000
SELMODRAFT_77868 Selaginella moellendorffii SELMODRAFT_77868 I 0.000
Solyc01g110480.2 Solanum lycopersicum Solyc01g110480.2 I 0.000
TCM_006766 Theobroma cacao TCM_006766 I 0.000
Thhalv10024895m.g Eutrema salsugineum Thhalv10024895m.g I 0.000
Traes_2AL_FA1957F59 Triticum aestivum Traes_2AL_FA1957F59 I 0.000
Traes_2BS_C9A338257 Triticum aestivum Traes_2BS_C9A338257 N 0.000
VIT_03s0038g00860 Vitis vinifera VIT_03s0038g00860 I 0.000