ZNF548 (Pan troglodytes)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSPTRG00000024292 T108318_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZNF548
M07691_2.00 		Homo sapiens
CCTGCHGVCVCCBBSVYYBBG
CVVRRBSVVGGBGBCDGCAGG		 ChIP-seq+ChIP-exo
Barazandeh et al.(2018)
ZNF548.RCADE.OriginalMapping 		0.827 1.000
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPTRP00000040298 C2H2 ZF 209 231
ENSPTRP00000040298 C2H2 ZF 237 259
ENSPTRP00000040298 C2H2 ZF 265 287
ENSPTRP00000040298 C2H2 ZF 293 315
ENSPTRP00000040298 C2H2 ZF 321 343
ENSPTRP00000040298 C2H2 ZF 349 371
ENSPTRP00000040298 C2H2 ZF 377 399
ENSPTRP00000040298 C2H2 ZF 405 427
ENSPTRP00000040298 C2H2 ZF 433 455
ENSPTRP00000040298 C2H2 ZF 461 483
ENSPTRP00000040298 C2H2 ZF 489 511

Links

Other C2H2 ZF family TFs
Other Pan troglodytes TFs

11 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA025973 Oryza indica BGIOSGA025973 N
BRADI1G24140 Brachypodium distachyon BRADI1G24140 N
GRMZM2G081782 Zea mays GRMZM2G081782 N
LPERR07G16580 Leersia perrieri LPERR07G16580 N
MLOC_52196 Hordeum vulgare MLOC_52196 N
OGLUM07G19030 Oryza glumaepatula OGLUM07G19030 N
OLONG_002240 Oryza longistaminata OLONG_002240 N
ONIVA07G17600 Oryza nivara ONIVA07G17600 N
ORGLA07G0246500 Oryza glaberrima ORGLA07G0246500 N
ORUFI07G20030 Oryza rufipogon ORUFI07G20030 N
OS07G0569700 Oryza sativa OS07G0569700 N
Pavir.Ba00594 Panicum virgatum Pavir.Ba00594 N
Pavir.J03938 Panicum virgatum Pavir.J03938 N
Sb02g036840 Sorghum bicolor Sb02g036840 N
Si030697m.g Setaria italica Si030697m.g N
Traes_2AS_E9A1F35CB Triticum aestivum Traes_2AS_E9A1F35CB N
Traes_2BS_67D862F4A Triticum aestivum Traes_2BS_67D862F4A N
Traes_2DS_2CE71025C Triticum aestivum Traes_2DS_2CE71025C N
TRIUR3_28482 Triticum urartu TRIUR3_28482 N