Prdm4 (Rattus norvegicus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSRNOG00000004962 T108897_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PRDM4
M02881_2.00 		Homo sapiens
TTTCAAGGCCCCC
GGGGGCCTTGAAA		 SELEX
Jolma et al.(2013)
PRDM4_1 		0.824 0.993
PRDM4
M04421_2.00 		Homo sapiens
YRRCNGTTTCAAGKCYMCCC
GGGKRGMCTTGAAACNGYYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_HT-SELEX 		0.824 0.993
PRDM4
M04422_2.00 		Homo sapiens
YRGCRGTTTCRAGGSTTVCC
GGBAASCCTYGAAACYGCYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_1 		0.824 0.993
PRDM4
M04423_2.00 		Homo sapiens
YRRCRGTTTCRAGKSYNCCC
GGGNRSMCTYGAAACYGYYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_2 		0.824 0.993
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000006886 C2H2 ZF 586 608
ENSRNOP00000006886 C2H2 ZF 614 636
ENSRNOP00000006886 C2H2 ZF 642 664
ENSRNOP00000006886 C2H2 ZF 670 692
ENSRNOP00000006886 C2H2 ZF 698 720
ENSRNOP00000006886 C2H2 ZF 726 747

Links

Other C2H2 ZF family TFs
Other Rattus norvegicus TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL000236 Aedes aegypti AAEL000236 I 0.000
AALB006646 Anopheles albimanus AALB006646 I 0.000
AARA001108 Anopheles arabiensis AARA001108 I 0.000
AATE003062 Anopheles atroparvus AATE003062 I 0.000
ACAC_0000772401 Angiostrongylus cantonensis ACAC_0000772401 I 0.000
ACEP16720 Atta cephalotes ACEP16720 I 0.000
ACHR005020 Anopheles christyi ACHR005020 I 0.000
ACOC_0000013301 Angiostrongylus costaricensis ACOC_0000013301 I 0.000
ACUA020854 Anopheles culicifacies ACUA020854 I 0.000
ACYPI002885 Acyrthosiphon pisum ACYPI002885 I 0.000
ADIR000975 Anopheles dirus ADIR000975 I 0.000
AEPI005796 Anopheles epiroticus AEPI005796 I 0.000
AFAF018179 Anopheles farauti AFAF018179 I 0.000
AFUN011568 Anopheles funestus AFUN011568 I 0.000
AGAP000069 Anopheles gambiae AGAP000069 I 0.000
Alligator_sinensis_CCG003246.1 Alligator sinensis Alligator_sinensis_CCG003246.1 N 0.000
AMAM011474 Anopheles maculatus AMAM011474 I 0.000
AMEC012184 Anopheles melas AMEC012184 I 0.000
AMEM007373 Anopheles merus AMEM007373 I 0.000
AMIN002134 Anopheles minimus AMIN002134 I 0.000
ANCCAN_30535 Ancylostoma caninum ANCCAN_30535 I 0.000
ANCCEY_07256 Ancylostoma ceylanicum ANCCEY_07256 I 0.000
AQUA008315 Anopheles quadriannulatus AQUA008315 I 0.000
ASIS005525 Anopheles sinensis ASIS005525 I 0.000
ASTEI06209 Anopheles stephensi ASTEI06209 I 0.000
ASU_00906 Ascaris suum ASU_00906 I 0.000
BGIBMGA001488 Bombyx mori BGIBMGA001488 I 0.000
BGLB003447 Biomphalaria glabrata BGLB003447 I 0.000
BTMF_0001614201 Brugia timori BTMF_0001614201 I 0.000
BXY_1193200 Bursaphelenchus xylophilus BXY_1193200 I 0.000
CapteG111555 Capitella teleta CapteG111555 I 0.000
CapteG82802 Capitella teleta CapteG82802 I 0.000
CBG12232 Caenorhabditis briggsae CBG12232 I 0.000
CBN31271 Caenorhabditis brenneri CBN31271 I 0.000
Cflo_07366--XP_001121752.1_APIME Camponotus floridanus Cflo_07366--XP_001121752.1_APIME I 0.000
CGI_10003726 Crassostrea gigas CGI_10003726 I 0.000
CGOC_0000329701 Cylicostephanus goldi CGOC_0000329701 I 0.000
CLEC001579 Cimex lectularius CLEC001579 I 0.000
CPIJ009525 Culex quinquefasciatus CPIJ009525 I 0.000
CpipJ_CPIJ009525 Culex pipiens CpipJ_CPIJ009525 I 0.000
CRE23967 Caenorhabditis remanei CRE23967 I 0.000
C_00890 Schistosoma haematobium C_00890 N 0.000
D915_07563 Fasciola hepatica D915_07563 I 0.000
D917_06283 Trichinella nativa D917_06283 I 0.000
D918_04073 Trichuris suis D918_04073 I 0.000
DAPPUDRAFT_50302 Daphnia pulex DAPPUDRAFT_50302 I 0.000
DICVIV_08747 Dictyocaulus viviparus DICVIV_08747 I 0.000
DME_0000296101 Dracunculus medinensis DME_0000296101 I 0.000
ECANG7_08418 Echinococcus canadensis ECANG7_08418 I 0.000
EEL_0000313101 Elaeophora elaphi EEL_0000313101 I 0.000
ENSLACG00000010819 Latimeria chalumnae ENSLACG00000010819 N 0.000
ENSPFOG00000001440 Poecilia formosa ENSPFOG00000001440 N 0.000
ENSXMAG00000012768 Xiphophorus maculatus ENSXMAG00000012768 N 0.000
fd102C Drosophila melanogaster FBgn0039937 D 0.000
fkh-10 Caenorhabditis elegans WBGene00001442 I 0.000
foxq2 Oryzias latipes ENSORLG00000004973 N 0.000
GA10799 Drosophila pseudoobscura FBgn0070855 I 0.000
GB50374 Apis mellifera GB50374 I 0.000
GE14501 Drosophila yakuba FBgn0232105 I 0.000
GF10343 Drosophila ananassae FBgn0087384 I 0.000
GG16435 Drosophila erecta FBgn0108666 I 0.000
GH24005 Drosophila grimshawi FBgn0131461 I 0.000
GI14084 Drosophila mojavensis FBgn0136838 I 0.000
GJ15974 Drosophila virilis FBgn0203160 I 0.000
GK13662 Drosophila willistoni FBgn0215670 I 0.000
GL15611 Drosophila persimilis FBgn0153215 I 0.000
GM26767 Drosophila sechellia FBgn0181620 I 0.000
GPUH_0002128801 Gongylonema pulchrum GPUH_0002128801 I 0.000
HCOI02176800 Haemonchus contortus HCOI02176800 I 0.000
HDID_0000955901 Hymenolepis diminuta HDID_0000955901 I 0.000
HelroG146879 Helobdella robusta HelroG146879 I 0.000
HelroG84905 Helobdella robusta HelroG84905 I 0.000
HMEL012130 Heliconius melpomene HMEL012130 I 0.000
HmN_000125600 Hymenolepis microstoma HmN_000125600 I 0.000
HNAJ_0000218001 Hymenolepis nana HNAJ_0000218001 I 0.000
HPBE_0001940301 Heligmosomoides bakeri HPBE_0001940301 I 0.000
HPLM_0001940801 Haemonchus placei HPLM_0001940801 I 0.000
Hsal_00505--XP_001121752.1_APIME Harpegnathos saltator Hsal_00505--XP_001121752.1_APIME I 0.000
ISCW003951 Ixodes scapularis ISCW003951 I 0.000
KGM_06490 Danaus plexippus KGM_06490 I 0.000
L596_g8980 Steinernema carpocapsae L596_g8980 I 0.000
L889_g23699 Steinernema feltiae L889_g23699 I 0.000
L892_g5229 Steinernema scapterisci L892_g5229 I 0.000
L893_g32272 Steinernema glaseri L893_g32272 I 0.000
L898_g16488 Steinernema monticolum L898_g16488 I 0.000
LCUP005975 Lucilia cuprina LCUP005975 I 0.000
LDEC001528 Leptinotarsa decemlineata LDEC001528 I 0.000
LLOJ007413 Lutzomyia longipalpis LLOJ007413 I 0.000
LotgiG69928 Lottia gigantea LotgiG69928 I 0.000
LotgiG79770 Lottia gigantea LotgiG79770 I 0.000
LotgiG79781 Lottia gigantea LotgiG79781 I 0.000
MCOS_0000398701 Mesocestoides corti MCOS_0000398701 N 0.000
MESCA005623 Megaselia scalaris MESCA005623 I 0.000
NBR_0000095001 Nippostrongylus brasiliensis NBR_0000095001 I 0.000
nDi.2.2.2.g05283 Dirofilaria immitis nDi.2.2.2.g05283 I 0.000
NECAME_04384 Necator americanus NECAME_04384 I 0.000
NEMVEDRAFT_v1g125256 Nematostella vectensis NEMVEDRAFT_v1g125256 I 0.000
NEMVEDRAFT_v1g39596 Nematostella vectensis NEMVEDRAFT_v1g39596 I 0.000
NEMVEDRAFT_v1g59063 Nematostella vectensis NEMVEDRAFT_v1g59063 I 0.000
nOo.2.0.1.g07936 Onchocerca ochengi nOo.2.0.1.g07936 I 0.000
NV18839 Nasonia vitripennis NV18839 I 0.000
Ocbimv22038677m.g Octopus bimaculoides Ocbimv22038677m.g I 0.000
OESDEN_02306 Oesophagostomum dentatum OESDEN_02306 I 0.000
Ogr12164 Ophisaurus gracilis Ogr12164 N 0.000
PHUM244390 Pediculus humanus PHUM244390 I 0.000
PPAI000826 Phlebotomus papatasi PPAI000826 I 0.000
Pvit_09831 Pogona vitticeps Pvit_09831 N 0.000
RPRC002475 Rhodnius prolixus RPRC002475 I 0.000
Sakowv30023329m.g Saccoglossus kowalevskii Sakowv30023329m.g I 0.000
Sakowv30023336m.g Saccoglossus kowalevskii Sakowv30023336m.g I 0.000
SBAD_0000682701 Soboliphyme baturini SBAD_0000682701 I 0.000
SINV17382 Solenopsis invicta SINV17382 I 0.000
SMAR012448 Strigamia maritima SMAR012448 I 0.000
SMRZ_0001178901 Schistosoma margrebowiei SMRZ_0001178901 N 0.000
SMU15004452 Schmidtea mediterranea SMU15004452 I 0.000
SVUK_0000095001 Strongylus vulgaris SVUK_0000095001 I 0.000
TC004761 Tribolium castaneum TC004761 I 0.000
TCLT_0000158601 Thelazia callipaeda TCLT_0000158601 I 0.000
TCNE_0000717001 Toxocara canis TCNE_0000717001 I 0.000
tetur01g09690 Tetranychus urticae tetur01g09690 I 0.000
TMUE_s0045003300 Trichuris muris TMUE_s0045003300 I 0.000
TsM_000487400 Taenia solium TsM_000487400 N 0.000
TTAC_0000212301 Hydatigera taeniaeformis TTAC_0000212301 I 0.000
TTRE_0000002201 Trichuris trichiura TTRE_0000002201 I 0.000
WBGene00238063 Onchocerca volvulus WBGene00238063 I 0.000
WUBG_10187 Wuchereria bancrofti WUBG_10187 I 0.000
XP_002159677.1 Hydra magnipapillata XP_002159677.1 I 0.000
YQE_09099 Dendroctonus ponderosae YQE_09099 I 0.000