Snai1 (Rattus norvegicus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSRNOG00000009594 T108954_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Snai1
M00781_2.00 		Mus musculus
NNNTGTCANN
NNTGACANNN		 PBM
Weirauch et al.(2013)
pTH2340 		0.827 1.000
Snai1
M09002_2.00 		Mus musculus
VCACCTGB
VCAGGTGB		 Misc
Kulakovskiy et al.(2013)
SNAI1_MOUSE.H11MO.0.C 		0.827 1.000
SNAI1
M04441_2.00 		Homo sapiens
NVCACCTGYN
NRCAGGTGBN		 SELEX
Yin et al.(2017)
SNAI1_eDBD_HT-SELEX 		0.822 0.967
SNAI1
M04443_2.00 		Homo sapiens
TRCACCTGYN
NRCAGGTGYA		 SELEX
Yin et al.(2017)
SNAI1_FL_HT-SELEX 		0.822 0.967
SNAI1
M08303_2.00 		Homo sapiens
NNNNGCACCTGCYNB
VNRGCAGGTGCNNNN		 ChIP-seq
Schmitges et al.(2016)
O95863.MEME 		0.822 0.967
SNAI1
M08886_2.00 		Homo sapiens
VCACCTGB
VCAGGTGB		 Misc
Kulakovskiy et al.(2013)
SNAI1_HUMAN.H11MO.0.C 		0.822 0.967
SNAI1
M10201_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SNA_Q4 		0.822 0.967
SNAI1
M10202_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SNA_Q6 		0.822 0.967
SNAI1
M04442_2.00 		Homo sapiens
NRCACCTGYN
NRCAGGTGYN		 SELEX
Yin et al.(2017)
SNAI1_eDBD_Methyl-HT-SELEX 		0.822 0.967
SNAI1
M04444_2.00 		Homo sapiens
YRCACCTGYN
NRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI1_FL_Methyl-HT-SELEX 		0.822 0.967
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000012939 C2H2 ZF 154 176
ENSRNOP00000012939 C2H2 ZF 180 202
ENSRNOP00000012939 C2H2 ZF 208 230
ENSRNOP00000012939 C2H2 ZF 236 257
ENSRNOP00000071187 C2H2 ZF 145 167
ENSRNOP00000071187 C2H2 ZF 171 193
ENSRNOP00000071187 C2H2 ZF 199 221
ENSRNOP00000071187 C2H2 ZF 227 248

Links

Other C2H2 ZF family TFs
Other Rattus norvegicus TFs

47 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000013478 Ailuropoda melanoleuca ENSAMEG00000013478 I 0.819
ENSBTAP00000019345-D1 Bos grunniens ENSBTAP00000019345-D1 I 0.816
ENSCSAG00000015065 Chlorocebus sabaeus ENSCSAG00000015065 I 0.822
ENSDNOG00000024891 Dasypus novemcinctus ENSDNOG00000024891 I 0.774
ENSETEG00000016371 Echinops telfairi ENSETEG00000016371 I 0.813
ENSGMOG00000017815 Gadus morhua ENSGMOG00000017815 I 0.779
ENSMICG00000011160 Microcebus murinus ENSMICG00000011160 I 0.822
ENSMLUG00000015053 Myotis lucifugus ENSMLUG00000015053 I 0.819
ENSMMUG00000019719 Macaca mulatta ENSMMUG00000019719 I 0.822
ENSMPUG00000017558 Mustela putorius furo ENSMPUG00000017558 I 0.819
ENSNLEG00000006985 Nomascus leucogenys ENSNLEG00000006985 I 0.822
ENSOARG00000013174 Ovis aries ENSOARG00000013174 I 0.816
ENSONIG00000020305 Oreochromis niloticus ENSONIG00000020305 I 0.779
ENSPANG00000007536 Papio anubis ENSPANG00000007536 I 0.822
ENSPFOG00000015709 Poecilia formosa ENSPFOG00000015709 I 0.779
ENSSTOG00000005866 Ictidomys tridecemlineatus ENSSTOG00000005866 I 0.816
ENSTNIG00000004434 Tetraodon nigroviridis ENSTNIG00000004434 I 0.767
ENSXMAG00000009637 Xiphophorus maculatus ENSXMAG00000009637 I 0.779
GB53867 Apis mellifera GB53867 I 0.758
GM16048 Drosophila sechellia FBgn0170964 I 0.759
Myotis_brandtii_SNAI1_10026057 Myotis brandtii Myotis_brandtii_SNAI1_10026057 I 0.817
Myotis_brandtii_SNAI1_10026379 Myotis brandtii Myotis_brandtii_SNAI1_10026379 I 0.818
SNAI1 Tupaia belangeri ENSTBEG00000012262 I 0.819
SNAI1 Tursiops truncatus ENSTTRG00000002029 I 0.816
SNAI1 Pteropus vampyrus ENSPVAG00000004119 I 0.816
SNAI1 Pan troglodytes ENSPTRG00000013614 I 0.822
SNAI1 Bos taurus ENSBTAG00000014554 I 0.816
SNAI1 Procavia capensis ENSPCAG00000011934 I 0.819
SNAI1 Canis familiaris ENSCAFG00000011499 I 0.819
SNAI1 Callithrix jacchus ENSCJAG00000000518 I 0.822
SNAI1 Cavia porcellus ENSCPOG00000026663 I 0.819
SNAI1 Dasypus novemcinctus ENSDNOG00000023834 I 0.819
SNAI1 Equus caballus ENSECAG00000009787 I 0.805
SNAI1 Felis catus ENSFCAG00000010558 I 0.807
SNAI1 Homo sapiens ENSG00000124216 D 0.822
SNAI1 Gorilla gorilla ENSGGOG00000024422 I 0.822
SNAI1 Loxodonta africana ENSLAFG00000030265 I 0.807
Snai1 Mus musculus ENSMUSG00000042821 D 0.827
SNAI1 Oryctolagus cuniculus ENSOCUG00000005422 I 0.793
SNAI1 Otolemur garnettii ENSOGAG00000030111 I 0.822
snai1a Tetraodon nigroviridis ENSTNIG00000007311 I 0.779
snai1a Takifugu rubripes ENSTRUG00000012293 I 0.779
snai1a Gasterosteus aculeatus ENSGACG00000010147 I 0.779
snai1a Danio rerio ENSDARG00000056995 I 0.772
snai3 Xenopus tropicalis XB-GENE-488030 I 0.772
snai3 Takifugu rubripes ENSTRUG00000002385 I 0.779