PRDM1 (Sus scrofa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSSSCG00000004369 T110245_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Prdm1
M08995_2.00 		Mus musculus
NNACTTTCHCTTYY
RRAAGDGAAAGTNN		 Misc
Kulakovskiy et al.(2013)
PRDM1_MOUSE.H11MO.0.A 		0.825 0.983
PRDM1
M02874_2.00 		Homo sapiens
NHACTTTCACTTTYN
NRAAAGTGAAAGTDN		 SELEX
Jolma et al.(2013)
PRDM1_1 		0.823 0.965
PRDM1
M02731_2.00 		Homo sapiens
YACTTTCACTTT
AAAGTGAAAGTR		 SELEX
Jolma et al.(2010)
PRDM1_dimer 		0.823 0.965
PRDM1
M04396_2.00 		Homo sapiens
NYACTTTCVCYN
NRGBGAAAGTRN		 SELEX
Yin et al.(2017)
PRDM1_eDBD_HT-SELEX 		0.823 0.965
PRDM1
M08083_2.00 		Homo sapiens
NHACTTTCHY
RDGAAAGTDN		 ChIP-seq
Mathelier et al.(2014)
MA0508.2 		0.823 0.965
PRDM1
M07845_2.00 		Homo sapiens
NHACTTTCHCTTHYN
NRDAAGDGAAAGTDN		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_PRDM1_Stanford 		0.823 0.965
PRDM1
M08191_2.00 		Homo sapiens
ACTTTCAC
GTGAAAGT		 ChIP-seq
Contrino et al.(2012)
Mv110 		0.823 0.965
PRDM1
M08192_2.00 		Homo sapiens
HRTCACTTT
AAAGTGAYD		 ChIP-seq
Contrino et al.(2012)
Mv112 		0.823 0.965
PRDM1
M08276_2.00 		Homo sapiens
HHNBYVCTTTCHCYY
RRGDGAAAGBRVNDD		 ChIP-seq
Schmitges et al.(2016)
O75626.MEME 		0.823 0.965
PRDM1
M08854_2.00 		Homo sapiens
NNACTTTCHCTTYY
RRAAGDGAAAGTNN		 Misc
Kulakovskiy et al.(2013)
PRDM1_HUMAN.H11MO.0.A 		0.823 0.965
PRDM1
M09500_2.00 		Homo sapiens
ACTTTCHCTKNN
NNMAGDGAAAGT		 Misc
Heinz et al.(2010)
Hela-PRDM1_GSE31477 		0.823 0.965
PRDM1
M10108_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BLIMP1_Q4 		0.823 0.965
PRDM1
M10109_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BLIMP1_Q6_01 		0.823 0.965
PRDM1
M10110_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BLIMP1_Q6 		0.823 0.965
PRDM1
M10111_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PRDM1_03 		0.823 0.965
PRDM1
M04397_2.00 		Homo sapiens
NCACTTTCVCYN
NRGBGAAAGTGN		 SELEX
Yin et al.(2017)
PRDM1_eDBD_Methyl-HT-SELEX 		0.823 0.965
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSSSCP00000004716 C2H2 ZF 579 601
ENSSSCP00000004716 C2H2 ZF 607 629
ENSSSCP00000004716 C2H2 ZF 635 657
ENSSSCP00000004716 C2H2 ZF 663 685
ENSSSCP00000004716 C2H2 ZF 691 713

Links

Other C2H2 ZF family TFs
Other Sus scrofa TFs

42 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000012733 Ailuropoda melanoleuca ENSAMEG00000012733 I
ENSBTAP00000053387-D1 Bos grunniens ENSBTAP00000053387-D1 I
ENSCSAG00000014693 Chlorocebus sabaeus ENSCSAG00000014693 I
ENSMPUG00000017610 Mustela putorius furo ENSMPUG00000017610 I
ENSPPYG00000011082 Pongo abelii ENSPPYG00000011082 I
ENSSTOG00000006323 Ictidomys tridecemlineatus ENSSTOG00000006323 I
Myotis_brandtii_ZNF335_10013703 Myotis brandtii Myotis_brandtii_ZNF335_10013703 I
Zfp335 Rattus norvegicus ENSRNOG00000017290 I
Zfp335 Dipodomys ordii ENSDORG00000007083 I
Zfp335 Mus musculus ENSMUSG00000039834 D
ZNF335 Myotis lucifugus ENSMLUG00000000282 I
ZNF335 Pteropus vampyrus ENSPVAG00000000383 I
ZNF335 Pan troglodytes ENSPTRG00000023353 I
ZNF335 Otolemur garnettii ENSOGAG00000015292 I
ZNF335 Oryctolagus cuniculus ENSOCUG00000016059 I
ZNF335 Loxodonta africana ENSLAFG00000016142 I
ZNF335 Gorilla gorilla ENSGGOG00000013550 I
ZNF335 Homo sapiens ENSG00000198026 D
ZNF335 Equus caballus ENSECAG00000023647 I
ZNF335 Cavia porcellus ENSCPOG00000000138 I
ZNF335 Callithrix jacchus ENSCJAG00000017215 I
ZNF335 Canis familiaris ENSCAFG00000009882 I
ZNF335 Bos taurus ENSBTAG00000010130 I