snai1a (Tetraodon nigroviridis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSTNIG00000007311 T112009_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Snai1
M00781_2.00 		Mus musculus
NNNTGTCANN
NNTGACANNN		 PBM
Weirauch et al.(2013)
pTH2340 		0.779 0.857
Snai1
M09002_2.00 		Mus musculus
VCACCTGB
VCAGGTGB		 Misc
Kulakovskiy et al.(2013)
SNAI1_MOUSE.H11MO.0.C 		0.779 0.857
SNAI1
M04441_2.00 		Homo sapiens
NVCACCTGYN
NRCAGGTGBN		 SELEX
Yin et al.(2017)
SNAI1_eDBD_HT-SELEX 		0.779 0.846
SNAI1
M04443_2.00 		Homo sapiens
TRCACCTGYN
NRCAGGTGYA		 SELEX
Yin et al.(2017)
SNAI1_FL_HT-SELEX 		0.779 0.846
SNAI1
M08303_2.00 		Homo sapiens
NNNNGCACCTGCYNB
VNRGCAGGTGCNNNN		 ChIP-seq
Schmitges et al.(2016)
O95863.MEME 		0.779 0.846
SNAI1
M08886_2.00 		Homo sapiens
VCACCTGB
VCAGGTGB		 Misc
Kulakovskiy et al.(2013)
SNAI1_HUMAN.H11MO.0.C 		0.779 0.846
SNAI1
M10201_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SNA_Q4 		0.779 0.846
SNAI1
M10202_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SNA_Q6 		0.779 0.846
SNAI1
M04442_2.00 		Homo sapiens
NRCACCTGYN
NRCAGGTGYN		 SELEX
Yin et al.(2017)
SNAI1_eDBD_Methyl-HT-SELEX 		0.779 0.846
SNAI1
M04444_2.00 		Homo sapiens
YRCACCTGYN
NRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI1_FL_Methyl-HT-SELEX 		0.779 0.846
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000001657 C2H2 ZF 153 175
ENSTNIP00000001657 C2H2 ZF 179 201
ENSTNIP00000001657 C2H2 ZF 207 229
ENSTNIP00000001657 C2H2 ZF 235 256
ENSTNIP00000010115 C2H2 ZF 148 170
ENSTNIP00000010115 C2H2 ZF 174 196
ENSTNIP00000010115 C2H2 ZF 202 224
ENSTNIP00000010115 C2H2 ZF 230 251

Links

Other C2H2 ZF family TFs
Other Tetraodon nigroviridis TFs

43 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSCSAG00000005873 Chlorocebus sabaeus ENSCSAG00000005873 I
ENSDORG00000009872 Dipodomys ordii ENSDORG00000009872 I
ENSECAG00000007669 Equus caballus ENSECAG00000007669 I
ENSETEG00000018347 Echinops telfairi ENSETEG00000018347 I
ENSMICG00000004728 Microcebus murinus ENSMICG00000004728 I
ENSMMUG00000001123 Macaca mulatta ENSMMUG00000001123 I
ENSMODG00000001577 Monodelphis domestica ENSMODG00000001577 N
ENSOARG00000006708 Ovis aries ENSOARG00000006708 I
ENSOCUG00000029438 Oryctolagus cuniculus ENSOCUG00000029438 I
ENSOGAG00000030326 Otolemur garnettii ENSOGAG00000030326 I
ENSOPRG00000011124 Ochotona princeps ENSOPRG00000011124 I
ENSP00000252797 Macaca fascicularis ENSP00000252797 I
ENSPANG00000015290 Papio anubis ENSPANG00000015290 I
ENSPCAG00000013838 Procavia capensis ENSPCAG00000013838 I
ENSSSCG00000007794 Sus scrofa ENSSSCG00000007794 I
ENSTBEG00000005266 Tupaia belangeri ENSTBEG00000005266 I
ENSVPAG00000010457 Vicugna pacos ENSVPAG00000010457 I
ZNF764 Gorilla gorilla ENSGGOG00000000422 I
ZNF764 Homo sapiens ENSG00000169951 D
ZNF764 Callithrix jacchus ENSCJAG00000002691 I
ZNF764 Pan troglodytes ENSPTRG00000008008 I