lmd (Drosophila melanogaster)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 FBgn0039039 T114578_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
lmd
M00564_2.00		 Drosophila melanogaster
NNCCCCCCVS
SBGGGGGGNN		 PBM
Busser et al.(2012b)
Lmd		 (Direct) (Direct)
lmd
M03702_2.00		 Drosophila melanogaster
BVCCCCCCRCNDHSH
DSDHNGYGGGGGGBV		 SELEX
Nitta et al.(2015)
lmd_1		 (Direct) (Direct)
lmd
M06157_2.00		 Drosophila melanogaster
MVKVCCCCCYRCNG
CNGYRGGGGGBMBK		 B1H
Zhu et al.(2011)
lmd_SANGER_5_FBgn0039039		 (Direct) (Direct)
lmd
M06158_2.00		 Drosophila melanogaster
NNNMCCCCCYRSNRN
NYNSYRGGGGGKNNN		 B1H
Zhu et al.(2011)
lmd_SOLEXA_5_FBgn0039039		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.755 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00564_2.00 C2H2 ZF 32 57
M00564_2.00 C2H2 ZF 66 93
M00564_2.00 C2H2 ZF 100 123
M00564_2.00 C2H2 ZF 129 153
M00564_2.00 C2H2 ZF 159 183

DNA Binding Domains

Protein ID Domain From To Sequence
FBpp0083757 C2H2 ZF 435 460
FBpp0083757 C2H2 ZF 469 496
FBpp0083757 C2H2 ZF 503 526
FBpp0083757 C2H2 ZF 532 556
FBpp0083757 C2H2 ZF 562 586
FBpp0307995 C2H2 ZF 6 25
FBpp0307995 C2H2 ZF 31 55
FBpp0307995 C2H2 ZF 61 85

Links

Other C2H2 ZF family TFs
Other Drosophila melanogaster TFs

24 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Alligator_sinensis_CCG006549.1 Alligator sinensis Alligator_sinensis_CCG006549.1 N 0.782
Alligator_sinensis_CCG012137.1 Alligator sinensis Alligator_sinensis_CCG012137.1 N 0.801
Cmyd_10020515 Chelonia mydas Cmyd_10020515 N 0.801
ENSACAG00000008910 Anolis carolinensis ENSACAG00000008910 N 0.801
ENSAMEG00000012129 Ailuropoda melanoleuca ENSAMEG00000012129 N 0.801
ENSDNOG00000012636 Dasypus novemcinctus ENSDNOG00000012636 N 0.801
ENSFCAG00000002365 Felis catus ENSFCAG00000002365 N 0.801
ENSLAFG00000031654 Loxodonta africana ENSLAFG00000031654 N 0.801
ENSMLUG00000030513 Myotis lucifugus ENSMLUG00000030513 N 0.801
ENSOANG00000029356 Ornithorhynchus anatinus ENSOANG00000029356 N 0.797
ENSOCUG00000004030 Oryctolagus cuniculus ENSOCUG00000004030 N 0.782
GA18349 Drosophila pseudoobscura FBgn0078354 I 0.827
GD18414 Drosophila simulans FBgn0189939 I 0.827
GE23994 Drosophila yakuba FBgn0241136 I 0.827
GF18275 Drosophila ananassae FBgn0095293 I 0.782
GG12470 Drosophila erecta FBgn0104758 I 0.827
GK11610 Drosophila willistoni FBgn0213621 I 0.822
GL27360 Drosophila persimilis FBgn0164941 I 0.827
GLIS1 Callithrix jacchus ENSCJAG00000004690 I 0.801
GLIS3 Tursiops truncatus ENSTTRG00000004021 N 0.801
GLIS3 Sus scrofa ENSSSCG00000005224 N 0.801
GLIS3 Choloepus hoffmanni ENSCHOG00000011466 N 0.801
GM23601 Drosophila sechellia FBgn0178466 I 0.827
Ogr15137 Ophisaurus gracilis Ogr15137 N 0.801