GA18349 (Drosophila pseudoobscura)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 FBgn0078354 T114733_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
lmd
M00564_2.00 		Drosophila melanogaster
NNCCCCCCVS
SBGGGGGGNN		 PBM
Busser et al.(2012b)
Lmd 		0.827 0.982
lmd
M03702_2.00 		Drosophila melanogaster
BVCCCCCCRCNDHSH
DSDHNGYGGGGGGBV		 SELEX
Nitta et al.(2015)
lmd_1 		0.827 0.982
lmd
M06157_2.00 		Drosophila melanogaster
MVKVCCCCCYRCNG
CNGYRGGGGGBMBK		 B1H
Zhu et al.(2011)
lmd_SANGER_5_FBgn0039039 		0.827 0.982
lmd
M06158_2.00 		Drosophila melanogaster
NNNMCCCCCYRSNRN
NYNSYRGGGGGKNNN		 B1H
Zhu et al.(2011)
lmd_SOLEXA_5_FBgn0039039 		0.827 0.982
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
FBpp0283457 C2H2 ZF 451 476
FBpp0283457 C2H2 ZF 485 512
FBpp0283457 C2H2 ZF 519 542
FBpp0283457 C2H2 ZF 548 572
FBpp0283457 C2H2 ZF 578 602

Links

Other C2H2 ZF family TFs
Other Drosophila pseudoobscura TFs

8 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
lmd Drosophila melanogaster FBgn0039039 D 0.827
GG12470 Drosophila erecta FBgn0104758 I 0.827
GL27360 Drosophila persimilis FBgn0164941 I 0.827
GM23601 Drosophila sechellia FBgn0178466 I 0.827
GD18414 Drosophila simulans FBgn0189939 I 0.827
GE23994 Drosophila yakuba FBgn0241136 I 0.827
GK11610 Drosophila willistoni FBgn0213621 I 0.822
GF18275 Drosophila ananassae FBgn0095293 I 0.782