GA11715 (Drosophila pseudoobscura)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 FBgn0071765 T114658_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CG12605
M03691_2.00 		Drosophila melanogaster
RHGCAACAGGTGN
NCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
CG12605_1 		0.825 0.991
CG12605
M06139_2.00 		Drosophila melanogaster
CACCTGTKG
CMACAGGTG		 B1H
Zhu et al.(2011)
CG12605_SANGER_10_FBgn0035481 		0.825 0.991
CG12605
M06140_2.00 		Drosophila melanogaster
MCACCTGTKGVNN
NNBCMACAGGTGK		 B1H
Zhu et al.(2011)
CG12605_SOLEXA_5_FBgn0035481 		0.825 0.991
scrt
M03673_2.00 		Drosophila melanogaster
RHGCAACAGGTGK
MCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
scrt_1 		0.788 0.921
scrt
M06085_2.00 		Drosophila melanogaster
MCCACCTGTTG
CAACAGGTGGK		 B1H
Zhu et al.(2011)
scrt_SANGER_2.5_FBgn0004880 		0.788 0.921
scrt
M06086_2.00 		Drosophila melanogaster
DNKCAACAGGTGK
MCACCTGTTGMNH		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_1_FBgn0004880 		0.788 0.921
scrt
M06087_2.00 		Drosophila melanogaster
VMCACCTGTTGMN
NKCAACAGGTGKB		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_2_FBgn0004880 		0.788 0.921
SCRT1
M02929_2.00 		Homo sapiens
RHKCAACAGGTGKNH
DNMCACCTGTTGMDY		 SELEX
Jolma et al.(2013)
SCRT1_1 		0.767 0.807
SCRT1
M04655_2.00 		Homo sapiens
NKCAACAGGTD
HACCTGTTGMN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_HT-SELEX 		0.767 0.807
SCRT1
M08397_2.00 		Homo sapiens
RWKCAACAGGTG
CACCTGTTGMWY		 ChIP-seq
Schmitges et al.(2016)
Q9BWW7_1-4.RCADE 		0.767 0.807
SCRT1
M04656_2.00 		Homo sapiens
NGCRACAGGTD
HACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_Methyl-HT-SELEX 		0.767 0.807
SCRT2
M02925_2.00 		Homo sapiens
RHGCAACAGGTGB
VCACCTGTTGCDY		 SELEX
Jolma et al.(2013)
SCRT2_1 		0.758 0.789
SCRT2
M04643_2.00 		Homo sapiens
NGCAACAGGTD
HACCTGTTGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_HT-SELEX 		0.758 0.789
SCRT2
M04644_2.00 		Homo sapiens
NGCRACAGGTG
CACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_Methyl-HT-SELEX 		0.758 0.789
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
FBpp0286552 C2H2 ZF 444 466
FBpp0286552 C2H2 ZF 475 497
FBpp0286552 C2H2 ZF 501 523
FBpp0286552 C2H2 ZF 529 551
FBpp0286552 C2H2 ZF 557 578

Links

Other C2H2 ZF family TFs
Other Drosophila pseudoobscura TFs

182 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30204.m001750 Ricinus communis 30204.m001750 N
AMTR_s00029p00248140 Amborella trichopoda AMTR_s00029p00248140 N
AMTR_s00045p00026940 Amborella trichopoda AMTR_s00045p00026940 N
BGIOSGA017449 Oryza indica BGIOSGA017449 N
BGIOSGA027556 Oryza indica BGIOSGA027556 N
BRADI2G41720 Brachypodium distachyon BRADI2G41720 N
cassava349.valid.m1 Manihot esculenta cassava349.valid.m1 N
chr1.LjT36F23.70.nd Lotus japonicus chr1.LjT36F23.70.nd N
Cla015187 Citrullus lanatus Cla015187 N
Cucsa.078210 Cucumis sativus Cucsa.078210 N
Eucgr.H00795 Eucalyptus grandis Eucgr.H00795 N
Eucgr.K02162 Eucalyptus grandis Eucgr.K02162 N
evm.TU.supercontig_8.144 Carica papaya evm.TU.supercontig_8.144 N
F775_03250 Aegilops tauschii F775_03250 N
gene17608-v1.0-hybrid Fragaria vesca gene17608-v1.0-hybrid N
GLYMA03G18725 Glycine max GLYMA03G18725 N
GLYMA08G46710 Glycine max GLYMA08G46710 N
GLYMA16G14060 Glycine max GLYMA16G14060 N
GLYMA18G36628 Glycine max GLYMA18G36628 N
Gorai.001G187100 Gossypium raimondii Gorai.001G187100 N
Gorai.007G155000 Gossypium raimondii Gorai.007G155000 N
GRMZM2G018048 Zea mays GRMZM2G018048 N
GRMZM2G350684 Zea mays GRMZM2G350684 N
GSMUA_Achr11G13340_001 Musa acuminata GSMUA_Achr11G13340_001 N
GSMUA_Achr1G21080_001 Musa acuminata GSMUA_Achr1G21080_001 N
LPERR11G18970 Leersia perrieri LPERR11G18970 N
Lus10011850.g Linum usitatissimum Lus10011850.g N
Lus10022788.g Linum usitatissimum Lus10022788.g N
MDP0000155726 Malus domestica MDP0000155726 N
MDP0000250529 Malus domestica MDP0000250529 N
MLOC_60761 Hordeum vulgare MLOC_60761 N
MTR_7g056603 Medicago truncatula MTR_7g056603 N
OB01G30180 Oryza brachyantha OB01G30180 N
OB05G35500 Oryza brachyantha OB05G35500 N
OBART05G28000 Oryza barthii OBART05G28000 N
OBART08G04660 Oryza barthii OBART08G04660 N
OGLUM05G29460 Oryza glumaepatula OGLUM05G29460 N
OGLUM08G04910 Oryza glumaepatula OGLUM08G04910 N
OLONG_007975 Oryza longistaminata OLONG_007975 N
OLONG_015531 Oryza longistaminata OLONG_015531 N
OMERI05G23880 Oryza meridionalis OMERI05G23880 N
OMERI08G04670 Oryza meridionalis OMERI08G04670 N
ONIVA05G29890 Oryza nivara ONIVA05G29890 N
ONIVA08G04510 Oryza nivara ONIVA08G04510 N
OPUNC05G25580 Oryza punctata OPUNC05G25580 N
OPUNC05G25600 Oryza punctata OPUNC05G25600 N
OPUNC08G04510 Oryza punctata OPUNC08G04510 N
ORUFI05G29980 Oryza rufipogon ORUFI05G29980 N
ORUFI08G05170 Oryza rufipogon ORUFI08G05170 N
OS08G0177300 Oryza sativa OS08G0177300 N
Pavir.J00429 Panicum virgatum Pavir.J00429 N
Pavir.J03231 Panicum virgatum Pavir.J03231 N
Pavir.J18859 Panicum virgatum Pavir.J18859 N
PDK_20s1355591g002 Phoenix dactylifera PDK_20s1355591g002 N
PK23540.1 Cannabis sativa PK23540.1 N
Pm020347 Prunus mume Pm020347 N
POPTR_0002s24490 Populus trichocarpa POPTR_0002s24490 N
POPTR_0014s19020 Populus trichocarpa POPTR_0014s19020 N
PRUPE_ppa000065mg Prunus persica PRUPE_ppa000065mg N
SapurV1A.0135s0340 Salix purpurea SapurV1A.0135s0340 N
SapurV1A.0342s0100 Salix purpurea SapurV1A.0342s0100 N
Sb03g025920 Sorghum bicolor Sb03g025920 N
Si000015m.g Setaria italica Si000015m.g N
Si020947m.g Setaria italica Si020947m.g N
Solyc06g083420.1 Solanum lycopersicum Solyc06g083420.1 N
TCM_002924 Theobroma cacao TCM_002924 N
Traes_1DL_7773A9BFB Triticum aestivum Traes_1DL_7773A9BFB N
Traes_3AL_06889C77D Triticum aestivum Traes_3AL_06889C77D N
Traes_3DL_FC1A52B36 Triticum aestivum Traes_3DL_FC1A52B36 N
TRIUR3_17785 Triticum urartu TRIUR3_17785 N
TRIUR3_27363 Triticum urartu TRIUR3_27363 N
VIT_07s0005g06680 Vitis vinifera VIT_07s0005g06680 N