POPTR_0002s24490 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0002s24490 T278231_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0002s24490.1 Myb 1096 1146

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

74 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SapurV1A.0135s0340 Salix purpurea SapurV1A.0135s0340 N 0.909
chr1.LjT36F23.70.nd Lotus japonicus chr1.LjT36F23.70.nd N 0.909
GLYMA08G46710 Glycine max GLYMA08G46710 N 0.887
cassava349.valid.m1 Manihot esculenta cassava349.valid.m1 N 0.887
gene17608-v1.0-hybrid Fragaria vesca gene17608-v1.0-hybrid N 0.887
Gorai.007G155000 Gossypium raimondii Gorai.007G155000 N 0.887
MDP0000155726 Malus domestica MDP0000155726 N 0.887
MDP0000250529 Malus domestica MDP0000250529 N 0.887
SapurV1A.0342s0100 Salix purpurea SapurV1A.0342s0100 N 0.887
GLYMA18G36628 Glycine max GLYMA18G36628 N 0.877
Cla015187 Citrullus lanatus Cla015187 N 0.876
Cucsa.078210 Cucumis sativus Cucsa.078210 N 0.876
POPTR_0014s19020 Populus trichocarpa POPTR_0014s19020 N 0.874
PRUPE_ppa000065mg Prunus persica PRUPE_ppa000065mg N 0.864
Pm020347 Prunus mume Pm020347 N 0.864
Gorai.001G187100 Gossypium raimondii Gorai.001G187100 N 0.856
TCM_002924 Theobroma cacao TCM_002924 N 0.854
Lus10011850.g Linum usitatissimum Lus10011850.g N 0.854
Lus10022788.g Linum usitatissimum Lus10022788.g N 0.854
evm.TU.supercontig_8.144 Carica papaya evm.TU.supercontig_8.144 N 0.847
PK23540.1 Cannabis sativa PK23540.1 N 0.846
EAF1B Arabidopsis thaliana AT3G24870 N 0.845
EAF1A Arabidopsis thaliana AT3G24880 N 0.845
MTR_7g056603 Medicago truncatula MTR_7g056603 N 0.845
Ciclev10018446m.g Citrus clementina Ciclev10018446m.g N 0.837
orange1.1g000147m.g Citrus sinensis orange1.1g000147m.g N 0.837
GLYMA03G18725 Glycine max GLYMA03G18725 N 0.834
GLYMA16G14060 Glycine max GLYMA16G14060 N 0.834
30204.m001750 Ricinus communis 30204.m001750 N 0.834
Gorai.004G226000 Gossypium raimondii Gorai.004G226000 N 0.833
fgenesh2_kg.3__2706__AT3G24880.1 Arabidopsis lyrata fgenesh2_kg.3__2706__AT3G24880.1 N 0.823
Bostr.19424s0133 Boechera stricta Bostr.19424s0133 N 0.823
Eucgr.H00795 Eucalyptus grandis Eucgr.H00795 N 0.821
GSMUA_Achr1G21080_001 Musa acuminata GSMUA_Achr1G21080_001 N 0.820
Solyc09g060080.2 Solanum lycopersicum Solyc09g060080.2 N 0.805
Solyc06g083420.1 Solanum lycopersicum Solyc06g083420.1 N 0.802
Thhalv10002368m.g Eutrema salsugineum Thhalv10002368m.g N 0.802
Eucgr.K02162 Eucalyptus grandis Eucgr.K02162 N 0.796
Bo7g031610 Brassica oleracea Bo7g031610 N 0.780
AMTR_s00045p00026940 Amborella trichopoda AMTR_s00045p00026940 N 0.778
Carubv10015863m.g Capsella rubella Carubv10015863m.g N 0.776
AMTR_s00029p00248140 Amborella trichopoda AMTR_s00029p00248140 N 0.770
Bo3g083740 Brassica oleracea Bo3g083740 N 0.769
Bra013238 Brassica rapa Bra013238 N 0.769
GSMUA_Achr11G13340_001 Musa acuminata GSMUA_Achr11G13340_001 N 0.768
PDK_20s1355591g002 Phoenix dactylifera PDK_20s1355591g002 N 0.767
VIT_07s0005g06680 Vitis vinifera VIT_07s0005g06680 N 0.764
Gorai.001G233800 Gossypium raimondii Gorai.001G233800 N 0.761
Bostr.2021s0055 Boechera stricta Bostr.2021s0055 N 0.749
Carubv10016123m.g Capsella rubella Carubv10016123m.g N 0.724
BRADI2G41720 Brachypodium distachyon BRADI2G41720 N 0.696
F775_03250 Aegilops tauschii F775_03250 N 0.696
LPERR11G18970 Leersia perrieri LPERR11G18970 N 0.696
TRIUR3_27363 Triticum urartu TRIUR3_27363 N 0.696
Bo4g133290 Brassica oleracea Bo4g133290 N 0.690
Bra032689 Brassica rapa Bra032689 N 0.690
BGIOSGA027556 Oryza indica BGIOSGA027556 N 0.689
OB01G30180 Oryza brachyantha OB01G30180 N 0.689
OBART08G04660 Oryza barthii OBART08G04660 N 0.689
OGLUM08G04910 Oryza glumaepatula OGLUM08G04910 N 0.689
OLONG_015531 Oryza longistaminata OLONG_015531 N 0.689
OMERI08G04670 Oryza meridionalis OMERI08G04670 N 0.689
ONIVA08G04510 Oryza nivara ONIVA08G04510 N 0.689
OPUNC08G04510 Oryza punctata OPUNC08G04510 N 0.689
ORUFI08G05170 Oryza rufipogon ORUFI08G05170 N 0.689
OS08G0177300 Oryza sativa OS08G0177300 N 0.689
Traes_3AL_06889C77D Triticum aestivum Traes_3AL_06889C77D N 0.689
Traes_3DL_FC1A52B36 Triticum aestivum Traes_3DL_FC1A52B36 N 0.689
BRADI2G14372 Brachypodium distachyon BRADI2G14372 N 0.686
SELMODRAFT_425792 Selaginella moellendorffii SELMODRAFT_425792 N 0.680
Sb03g025920 Sorghum bicolor Sb03g025920 N 0.667
Si000015m.g Setaria italica Si000015m.g N 0.667
Si020947m.g Setaria italica Si020947m.g N 0.667
Pavir.J18859 Panicum virgatum Pavir.J18859 N 0.667