GLYMA13G19550 (Glycine max)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 GLYMA13G19550 T118408_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.780 0.761
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.780 0.761
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.775 0.717
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.770 0.739
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.770 0.739
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.764 0.696
AT3G46070
M06813_2.00 		Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD		 Dap-seq
OMalley et al.(2016)
AT3G46070_col_a 		0.756 0.739
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GLYMA13G19550.1 C2H2 ZF 34 56
GLYMA13G19550.1 C2H2 ZF 79 101

Links

Other C2H2 ZF family TFs
Other Glycine max TFs

285 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28219.m000090 Ricinus communis 28219.m000090 I
ANAC019 Arabidopsis lyrata fgenesh2_kg.1__4367__AT1G52890.1 I
Aquca_024_00080 Aquilegia coerulea Aquca_024_00080 I
ATNAC3 Arabidopsis lyrata fgenesh2_kg.3__1697__AT3G15500.1 I
Bo1g048300 Brassica oleracea Bo1g048300 I
Bo1g128450 Brassica oleracea Bo1g128450 I
Bo3g066850 Brassica oleracea Bo3g066850 I
Bo5g127040 Brassica oleracea Bo5g127040 I
Bo6g030940 Brassica oleracea Bo6g030940 I
Bo7g111390 Brassica oleracea Bo7g111390 I
Bostr.0124s0082 Boechera stricta Bostr.0124s0082 I
Bostr.28625s0149 Boechera stricta Bostr.28625s0149 I
Bostr.7867s0562 Boechera stricta Bostr.7867s0562 I
Bra001596 Brassica rapa Bra001596 I
Bra018998 Brassica rapa Bra018998 I
Bra019052 Brassica rapa Bra019052 I
Bra021113 Brassica rapa Bra021113 I
Bra026353 Brassica rapa Bra026353 I
Bra027238 Brassica rapa Bra027238 I
Cagra.0007s0097 Capsella grandiflora Cagra.0007s0097 I
Cagra.0570s0027 Capsella grandiflora Cagra.0570s0027 I
Cagra.0946s0025 Capsella grandiflora Cagra.0946s0025 I
Carubv10005353m.g Capsella rubella Carubv10005353m.g I
Carubv10009816m.g Capsella rubella Carubv10009816m.g I
Carubv10014211m.g Capsella rubella Carubv10014211m.g I
cassava2098.valid.m1 Manihot esculenta cassava2098.valid.m1 I
cassava42313.valid.m1 Manihot esculenta cassava42313.valid.m1 I
Ca_21186 Cicer arietinum Ca_21186 I
chr3.CM0590.390.nd Lotus japonicus chr3.CM0590.390.nd I
Ciclev10008812m.g Citrus clementina Ciclev10008812m.g I
Cla011949 Citrullus lanatus Cla011949 I
Cla023770 Citrullus lanatus Cla023770 I
Cucsa.074610 Cucumis sativus Cucsa.074610 I
Cucsa.341800 Cucumis sativus Cucsa.341800 I
Eucgr.F01093 Eucalyptus grandis Eucgr.F01093 I
evm.TU.supercontig_80.93 Carica papaya evm.TU.supercontig_80.93 I
gene31149-v1.0-hybrid Fragaria vesca gene31149-v1.0-hybrid I
GLYMA06G38410 Glycine max GLYMA06G38410 I
GLYMA12G22880 Glycine max GLYMA12G22880 I
GLYMA12G35000 Glycine max GLYMA12G35000 I
GLYMA13G35550 Glycine max GLYMA13G35550 I
Gorai.002G073700 Gossypium raimondii Gorai.002G073700 I
Gorai.009G433200 Gossypium raimondii Gorai.009G433200 I
LjSGA_036303.1 Lotus japonicus LjSGA_036303.1 I
MDP0000132623 Malus domestica MDP0000132623 I
MDP0000262032 Malus domestica MDP0000262032 I
mgf001766m Mimulus guttatus mgf001766m I
mgf013765m Mimulus guttatus mgf013765m I
MTR_2g079990 Medicago truncatula MTR_2g079990 I
MTR_8g059170 Medicago truncatula MTR_8g059170 I
NAC019 Arabidopsis thaliana AT1G52890 D
NAC055 Arabidopsis thaliana AT3G15500 D
orange1.1g019011m.g Citrus sinensis orange1.1g019011m.g I
PGSC0003DMG400015342 Solanum tuberosum PGSC0003DMG400015342 I
PGSC0003DMG400019294 Solanum tuberosum PGSC0003DMG400019294 I
PK20135.1 Cannabis sativa PK20135.1 I
Pm011603 Prunus mume Pm011603 I
POPTR_0001s41460 Populus trichocarpa POPTR_0001s41460 I
POPTR_0011s12400 Populus trichocarpa POPTR_0011s12400 I
POPTR_1659s00200 Populus trichocarpa POPTR_1659s00200 I
PRUPE_ppa008301mg Prunus persica PRUPE_ppa008301mg I
RD26 Arabidopsis lyrata fgenesh2_kg.7__1491__AT4G27410.3 I
RD26 Arabidopsis thaliana AT4G27410 I
SapurV1A.0127s0020 Salix purpurea SapurV1A.0127s0020 I
SapurV1A.0864s0080 Salix purpurea SapurV1A.0864s0080 I
SapurV1A.1471s0010 Salix purpurea SapurV1A.1471s0010 I
Solyc12g013620.1 Solanum lycopersicum Solyc12g013620.1 I
TCM_031364 Theobroma cacao TCM_031364 I
Thhalv10011676m.g Eutrema salsugineum Thhalv10011676m.g I
Thhalv10021174m.g Eutrema salsugineum Thhalv10021174m.g I
Thhalv10025818m.g Eutrema salsugineum Thhalv10025818m.g I
VIT_06s0004g03080 Vitis vinifera VIT_06s0004g03080 I
VIT_19s0014g03290 Vitis vinifera VIT_19s0014g03290 I