HelroG136424 (Helobdella robusta)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 HelroG136424 T119170_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SP8
M02898_2.00 		Homo sapiens
VMCACBCCCMCH
DGKGGGVGTGKB		 SELEX
Jolma et al.(2013)
SP8_1 		0.779 0.870
Sp1
M03682_2.00 		Drosophila melanogaster
HNGCCACGCCCARK
MYTGGGCGTGGCND		 SELEX
Nitta et al.(2015)
Sp1_1 		0.779 0.870
SP8
M04517_2.00 		Homo sapiens
NMCMCGCCCMYH
DRKGGGCGKGKN		 SELEX
Yin et al.(2017)
SP8_eDBD_HT-SELEX 		0.779 0.870
SP9
M04645_2.00 		Homo sapiens
VMCMCGCCCMYH
DRKGGGCGKGKB		 SELEX
Yin et al.(2017)
SP9_eDBD_HT-SELEX 		0.779 0.870
Sp1
M06117_2.00 		Drosophila melanogaster
DHYMCGCCCMY
RKGGGCGKRDH		 B1H
Zhu et al.(2011)
Sp1_SANGER_5_FBgn0020378 		0.779 0.870
Sp1
M06118_2.00 		Drosophila melanogaster
NKHHMCGCCCMYNN
NNRKGGGCGKDDMN		 B1H
Zhu et al.(2011)
Sp1_SOLEXA_2.5_FBgn0020378 		0.779 0.870
SP8
M04518_2.00 		Homo sapiens
RHCACGCCCMYH
DRKGGGCGTGDY		 SELEX
Yin et al.(2017)
SP8_eDBD_Methyl-HT-SELEX 		0.779 0.870
SP9
M04646_2.00 		Homo sapiens
RYCACGCCCMYH
DRKGGGCGTGRY		 SELEX
Yin et al.(2017)
SP9_eDBD_Methyl-HT-SELEX 		0.779 0.870
Sp5
M09016_2.00 		Mus musculus
CYCCKCCYHYHBCYYHBYYYHYHB
VDRDRRRVDRRGVDRDRGGMGGRG		 Misc
Kulakovskiy et al.(2013)
SP5_MOUSE.H11MO.0.C 		0.775 0.841
SP5
M10319_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SP5_Q2 		0.775 0.841
SP3
M02910_2.00 		Homo sapiens
VCCMCRCCCMY
RKGGGYGKGGB		 SELEX
Jolma et al.(2013)
SP3_1 		0.773 0.855
SP3
M04558_2.00 		Homo sapiens
NRCCACGCCCMYH
DRKGGGCGTGGYN		 SELEX
Yin et al.(2017)
SP3_eDBD_HT-SELEX 		0.773 0.855
SP3
M08920_2.00 		Homo sapiens
NBBNVSCCCCKCCCMBBBNN
NNVVVKGGGMGGGGSBNVVN		 Misc
Kulakovskiy et al.(2013)
SP3_HUMAN.H11MO.0.B 		0.773 0.855
SP3
M10263_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SP3_Q3_01 		0.773 0.855
SP3
M10264_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SP3_Q3 		0.773 0.855
SP3
M04559_2.00 		Homo sapiens
NRCCMCGCCCMCH
DGKGGGCGKGGYN		 SELEX
Yin et al.(2017)
SP3_eDBD_Methyl-HT-SELEX 		0.773 0.855
Sp3
M08978_2.00 		Mus musculus
NBBNVSCCCCKCCCMBBBNN
NNVVVKGGGMGGGGSBNVVN		 Misc
Kulakovskiy et al.(2013)
SP3_MOUSE.H11MO.0.B 		0.762 0.855
Spps
M06159_2.00 		Drosophila melanogaster
KWDRCCMCGCCCMBH
DVKGGGCGKGGYHWM		 B1H
Zhu et al.(2011)
CG5669_SANGER_10_FBgn0039169 		0.758 0.797
Spps
M06160_2.00 		Drosophila melanogaster
BDDGCCMCGCCCMYN
NRKGGGCGKGGCHHV		 B1H
Zhu et al.(2011)
CG5669_SOLEXA_5_FBgn0039169 		0.758 0.797
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
HelroP136424 C2H2 ZF 35 59
HelroP136424 C2H2 ZF 65 89
HelroP136424 C2H2 ZF 95 117

Links

Other C2H2 ZF family TFs
Other Helobdella robusta TFs

463 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Alligator_sinensis_CCG004871.1 Alligator sinensis Alligator_sinensis_CCG004871.1 N
BGLB013051 Biomphalaria glabrata BGLB013051 N
CGI_10026455 Crassostrea gigas CGI_10026455 N
Cmyd_10002903 Chelonia mydas Cmyd_10002903 N
DAPPUDRAFT_111472 Daphnia pulex DAPPUDRAFT_111472 N
ENSAMEG00000008949 Ailuropoda melanoleuca ENSAMEG00000008949 N
ENSAMXG00000008885 Astyanax mexicanus ENSAMXG00000008885 N
ENSAPLG00000007652 Anas platyrhynchos ENSAPLG00000007652 N
ENSCSAG00000014622 Chlorocebus sabaeus ENSCSAG00000014622 N
ENSDORG00000003558 Dipodomys ordii ENSDORG00000003558 N
ENSGMOG00000006125 Gadus morhua ENSGMOG00000006125 N
ENSLACG00000008814 Latimeria chalumnae ENSLACG00000008814 N
ENSLOCG00000017084 Lepisosteus oculatus ENSLOCG00000017084 N
ENSMICG00000001097 Microcebus murinus ENSMICG00000001097 N
ENSMPUG00000001648 Mustela putorius furo ENSMPUG00000001648 N
ENSNLEG00000013845 Nomascus leucogenys ENSNLEG00000013845 N
ENSOARG00000011775 Ovis aries ENSOARG00000011775 N
ENSONIG00000000112 Oreochromis niloticus ENSONIG00000000112 N
ENSP00000352819 Macaca fascicularis ENSP00000352819 N
ENSP00000352819-D1 Bos grunniens ENSP00000352819-D1 N
ENSPANG00000017638 Papio anubis ENSPANG00000017638 N
ENSPFOG00000019371 Poecilia formosa ENSPFOG00000019371 N
ENSPPYG00000016866 Pongo abelii ENSPPYG00000016866 N
ENSPSIG00000002567 Pelodiscus sinensis ENSPSIG00000002567 N
ENSSHAG00000013340 Sarcophilus harrisii ENSSHAG00000013340 N
ENSSTOG00000016567 Ictidomys tridecemlineatus ENSSTOG00000016567 N
ENSXMAG00000002547 Xiphophorus maculatus ENSXMAG00000002547 N
GB51085 Apis mellifera GB51085 N
gw.79.7.1 Branchiostoma floridae gw.79.7.1 N
HHAL009600-PA Halyomorpha halys HHAL009600-PA N
L798_05013 Zootermopsis nevadensis L798_05013 N
LotgiG130257 Lottia gigantea LotgiG130257 N
Ocbimv22009191m.g Octopus bimaculoides Ocbimv22009191m.g N
prdm13 Tetraodon nigroviridis ENSTNIG00000006867 N
PRDM13 Dasypus novemcinctus ENSDNOG00000006520 N
prdm13 Danio rerio ENSDARG00000078701 N
PRDM13 Callithrix jacchus ENSCJAG00000001421 N
PRDM13 Choloepus hoffmanni ENSCHOG00000011613 N
PRDM13 Tursiops truncatus ENSTTRG00000004705 N
prdm13 Takifugu rubripes ENSTRUG00000000334 N
prdm13 Xenopus tropicalis XB-GENE-960155 N
PRDM13 Loxodonta africana ENSLAFG00000012439 N
PRDM13 Canis familiaris ENSCAFG00000023314 N
PRDM13 Felis catus ENSFCAG00000010288 N
PRDM13 Myotis lucifugus ENSMLUG00000001899 N
PRDM13 Monodelphis domestica ENSMODG00000018089 N
PRDM13 Gorilla gorilla ENSGGOG00000006947 N
Prdm13 Mus musculus ENSMUSG00000040478 N
prdm13 Gasterosteus aculeatus ENSGACG00000005032 N
PRDM13 Homo sapiens ENSG00000112238 N
PRDM13 Oryctolagus cuniculus ENSOCUG00000003216 N
PRDM13 Otolemur garnettii ENSOGAG00000031927 N
PRDM13 Sus scrofa ENSSSCG00000004354 N
prdm13 Oryzias latipes ENSORLG00000002129 N
PRDM13 Echinops telfairi ENSETEG00000004709 N
PRDM13 Bos taurus ENSBTAG00000006095 N
PRDM13 Pan troglodytes ENSPTRG00000018445 N
PRDM13 Pteropus vampyrus ENSPVAG00000001695 N
Prdm13 Rattus norvegicus ENSRNOG00000007683 N
RPRC014451 Rhodnius prolixus RPRC014451 N
Sakowv30027334m.g Saccoglossus kowalevskii Sakowv30027334m.g N
SPU_012050 Strongylocentrotus purpuratus SPU_012050 N
TC014373 Tribolium castaneum TC014373 N
XP_002158638.1 Hydra magnipapillata XP_002158638.1 N