ISCW016418 (Ixodes scapularis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ISCW016418 T120026_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BCL11B
M04453_2.00 		Homo sapiens
GTGAACGBNDNNVCTACAC
GTGTAGBNNHNVCGTTCAC		 SELEX
Yin et al.(2017)
BCL11B_eDBD_HT-SELEX 		0.790 0.876
BCL11B
M04454_2.00 		Homo sapiens
GTGAACGBNDNHVCTACAC
GTGTAGBDNHNVCGTTCAC		 SELEX
Yin et al.(2017)
BCL11B_eDBD_Methyl-HT-SELEX 		0.790 0.876
BCL11A
M07926_2.00 		Homo sapiens
BTYTCASTTCCYYHH
DDRRGGAASTGARAV		 ChIP-seq
Gerstein et al.(2012)
GM12878_BCL11A_HudsonAlpha 		0.773 0.867
BCL11A
M08881_2.00 		Homo sapiens
BHBYCABTTCCYBHNYN
NRNDVRGGAAVTGRVDV		 Misc
Kulakovskiy et al.(2013)
BC11A_HUMAN.H11MO.0.A 		0.773 0.867
BCL11A
M10187_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL11A_02 		0.773 0.867
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ISCW016418-PA C2H2 ZF 318 339
ISCW016418-PA C2H2 ZF 345 367
ISCW016418-PA C2H2 ZF 494 516
ISCW016418-PA C2H2 ZF 522 544
ISCW016418-PA C2H2 ZF 552 573

Links

Other C2H2 ZF family TFs
Other Ixodes scapularis TFs

129 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PBANKA_093910 Plasmodium berghei PBANKA_093910 I
PCHAS_090520 Plasmodium chabaudi PCHAS_090520 I
PF11_0091 Plasmodium falciparum PF11_0091 D
PKH_090510 Plasmodium knowlesi PKH_090510 I
PY07039 Plasmodium yoelii PY07039 I