MCINX009924 (Melitaea cinxia)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 MCINX009924 T122969_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
scrt
M03673_2.00 		Drosophila melanogaster
RHGCAACAGGTGK
MCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
scrt_1 		0.756 0.851
scrt
M06085_2.00 		Drosophila melanogaster
MCCACCTGTTG
CAACAGGTGGK		 B1H
Zhu et al.(2011)
scrt_SANGER_2.5_FBgn0004880 		0.756 0.851
scrt
M06086_2.00 		Drosophila melanogaster
DNKCAACAGGTGK
MCACCTGTTGMNH		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_1_FBgn0004880 		0.756 0.851
scrt
M06087_2.00 		Drosophila melanogaster
VMCACCTGTTGMN
NKCAACAGGTGKB		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_2_FBgn0004880 		0.756 0.851
SCRT1
M02929_2.00 		Homo sapiens
RHKCAACAGGTGKNH
DNMCACCTGTTGMDY		 SELEX
Jolma et al.(2013)
SCRT1_1 		0.756 0.763
SCRT1
M04655_2.00 		Homo sapiens
NKCAACAGGTD
HACCTGTTGMN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_HT-SELEX 		0.756 0.763
SCRT1
M08397_2.00 		Homo sapiens
RWKCAACAGGTG
CACCTGTTGMWY		 ChIP-seq
Schmitges et al.(2016)
Q9BWW7_1-4.RCADE 		0.756 0.763
SCRT1
M04656_2.00 		Homo sapiens
NGCRACAGGTD
HACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_Methyl-HT-SELEX 		0.756 0.763
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MCINX009924-PA C2H2 ZF 204 226
MCINX009924-PA C2H2 ZF 235 257
MCINX009924-PA C2H2 ZF 261 283
MCINX009924-PA C2H2 ZF 289 313
MCINX009924-PA C2H2 ZF 319 340

Links

Other C2H2 ZF family TFs
Other Melitaea cinxia TFs

55 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA027579 Oryza indica BGIOSGA027579 N
BRADI3G15880 Brachypodium distachyon BRADI3G15880 N
F775_29092 Aegilops tauschii F775_29092 N
GRMZM2G022359 Zea mays GRMZM2G022359 N
LPERR08G04150 Leersia perrieri LPERR08G04150 N
MLOC_71599 Hordeum vulgare MLOC_71599 N
OB08G14470 Oryza brachyantha OB08G14470 N
OGLUM08G04530 Oryza glumaepatula OGLUM08G04530 N
OMERI08G04370 Oryza meridionalis OMERI08G04370 N
ONIVA08G04140 Oryza nivara ONIVA08G04140 N
OPUNC08G04240 Oryza punctata OPUNC08G04240 N
ORGLA08G0037300 Oryza glaberrima ORGLA08G0037300 N
ORUFI08G04760 Oryza rufipogon ORUFI08G04760 N
Pavir.Ca00106 Panicum virgatum Pavir.Ca00106 N
Pavir.Cb02104 Panicum virgatum Pavir.Cb02104 N
Sb07g004580 Sorghum bicolor Sb07g004580 N
Si010747m.g Setaria italica Si010747m.g N
Si026706m.g Setaria italica Si026706m.g N
Traes_7DL_AF3F7B5B2 Triticum aestivum Traes_7DL_AF3F7B5B2 N
TRIUR3_34177 Triticum urartu TRIUR3_34177 N