POPTR_0019s11520 (Populus trichocarpa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 POPTR_0019s11520 T126851_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
STOP1
M06801_2.00 		Arabidopsis thaliana
CCTBCMCCAGDTRHHMCYY
RRGKDDYAHCTGGKGVAGG		 Dap-seq
OMalley et al.(2016)
STOP1_col_a 		0.797 0.933
STOP1
M06802_2.00 		Arabidopsis thaliana
RCCTNCMCCRGWWRN
NYWWCYGGKGNAGGY		 Dap-seq
OMalley et al.(2016)
STOP1_colamp_a 		0.797 0.933
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0019s11520.1 C2H2 ZF 359 381
POPTR_0019s11520.1 C2H2 ZF 380 411

Links

Other C2H2 ZF family TFs
Other Populus trichocarpa TFs

75 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo4g151030 Brassica oleracea Bo4g151030 I
Bo8g100870 Brassica oleracea Bo8g100870 I
Bostr.19427s0044 Boechera stricta Bostr.19427s0044 N
Bra030207 Brassica rapa Bra030207 I
Bra039927 Brassica rapa Bra039927 I
Cagra.0882s0006 Capsella grandiflora Cagra.0882s0006 N
Carubv10023610m.g Capsella rubella Carubv10023610m.g N
Ca_05320 Cicer arietinum Ca_05320 I
F775_16881 Aegilops tauschii F775_16881 N
GLYMA05G23291 Glycine max GLYMA05G23291 I
GLYMA17G16741 Glycine max GLYMA17G16741 I
Gorai.012G161900 Gossypium raimondii Gorai.012G161900 I
GRMZM2G036554 Zea mays GRMZM2G036554 I
LPERR12G15010 Leersia perrieri LPERR12G15010 N
Lus10011578.g Linum usitatissimum Lus10011578.g I
Lus10019247.g Linum usitatissimum Lus10019247.g I
MTR_4g097940 Medicago truncatula MTR_4g097940 I
NAI1 Arabidopsis lyrata fgenesh2_kg.4__198__AT2G22770.1 N
Pavir.J26871 Panicum virgatum Pavir.J26871 I
Si011709m.g Setaria italica Si011709m.g I
Si024086m.g Setaria italica Si024086m.g I
Thhalv10000251m.g Eutrema salsugineum Thhalv10000251m.g N