Solyc01g090840.2 (Solanum lycopersicum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Solyc01g090840.2 T129343_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.773 0.826
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.773 0.804
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.772 0.783
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc01g090840.2.1 C2H2 ZF 182 204
Solyc01g090840.2.1 C2H2 ZF 233 255

Links

Other C2H2 ZF family TFs
Other Solanum lycopersicum TFs

107 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R015695 Calypte anna Aan_R015695 I
Afo_R010468 Aptenodytes forsteri Afo_R010468 I
Cmyd_10009547 Chelonia mydas Cmyd_10009547 I
ENSAMXG00000002697 Astyanax mexicanus ENSAMXG00000002697 I
ENSBTAG00000031214 Bos taurus ENSBTAG00000031214 N
ENSBTAP00000012124-D1 Bos grunniens ENSBTAP00000012124-D1 N
ENSDNOG00000030863 Dasypus novemcinctus ENSDNOG00000030863 N
ENSFALG00000005506 Ficedula albicollis ENSFALG00000005506 I
ENSGALG00000006448 Gallus gallus ENSGALG00000006448 I
ENSGMOG00000002737 Gadus morhua ENSGMOG00000002737 N
ENSLACG00000007228 Latimeria chalumnae ENSLACG00000007228 I
ENSLAFG00000030530 Loxodonta africana ENSLAFG00000030530 I
ENSLOCG00000003532 Lepisosteus oculatus ENSLOCG00000003532 I
ENSMODG00000019483 Monodelphis domestica ENSMODG00000019483 I
ENSOARG00000001815 Ovis aries ENSOARG00000001815 N
ENSONIG00000005631 Oreochromis niloticus ENSONIG00000005631 I
ENSONIG00000017148 Oreochromis niloticus ENSONIG00000017148 I
ENSP00000370343 Macaca fascicularis ENSP00000370343 I
ENSPSIG00000003518 Pelodiscus sinensis ENSPSIG00000003518 I
ENSSHAG00000012864 Sarcophilus harrisii ENSSHAG00000012864 I
ENSTGUG00000006609 Taeniopygia guttata ENSTGUG00000006609 I
ENSXMAG00000003082 Xiphophorus maculatus ENSXMAG00000003082 I
ENSXMAG00000017848 Xiphophorus maculatus ENSXMAG00000017848 N
Gfo_R005312 Geospiza fortis Gfo_R005312 I
irf10 Xenopus tropicalis XB-GENE-1033046 I
irf10 Takifugu rubripes ENSTRUG00000002917 I
irf10 Tetraodon nigroviridis ENSTNIG00000012613 I
irf10 Oryzias latipes ENSORLG00000011745 N
irf10 Gasterosteus aculeatus ENSGACG00000015123 I
irf10 Danio rerio ENSDARG00000027658 I
irf8 Gasterosteus aculeatus ENSGACG00000015958 I
Ogr04948 Ophisaurus gracilis Ogr04948 N